BMRB Entry 51842

Name: 1H, 13C and 15N resonance assignments of four MEF2D b-domain peptide constructs (var4)
Published: 2023-02-21

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR51842

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

1H, 13C and 15N resonance assignments of four MEF2D b-domain peptide constructs (var4)

Deposition date:

2023-02-18

Original release date:

2023-02-21

Authors:

Nagy, Tamas Milan; Feher, Krisztina; Kover, Katalin

Citation:

Citation: Gonczi, Monika; Teixeira, Joao; Barrera-Vilarmau, Susana; Mediani, Laura; Antoniani, Francesco; Nagy, Tamas Milan; Feher, Krisztina; Raduly, Zsolt; Ambrus, Viktor; Tozser, Jozsef; Barta, Endre; Kover, Katalin; Csernoch, Laszlo; Carra, Serena; Fuxreiter, Monika. "Alternatively spliced exon regulates context-dependent MEF2D higher-order assembly during myogenesis" Nat. Commun. 14, 1329-1329 (2023).
PubMed: 36898987

Assembly members:

Assembly members:
entity_1, polymer, 37 residues, Formula weight is not available

Natural source:

Natural source: Common Name: not available Taxonomy ID: not available Superkingdom: not available Kingdom: not available Genus/species: not available not available

Experimental source:

Experimental source: Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: SRKPDLRVITSQAGKGLMHH LTEDHLDNNNHQRLGTS

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1

Data type	Count
13C chemical shifts	73
15N chemical shifts	4
1H chemical shifts	210

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	MEF2D var4	1

Entities:

Entity 1, MEF2D var4 37 residues - Formula weight is not available

1

SER

ARG

LYS

PRO

ASP

LEU

ARG

VAL

ILE

THR

2

SER

GLN

ALA

GLY

LYS

GLY

LEU

MET

HIS

3

LEU

THR

GLU

ASP

HIS

LEU

ASP

ASN

4

HIS

GLN

ARG

LEU

GLY

THR

SER

Samples:

sample_1: MEF2D construct var4, [U-15N]-Leu, 1 mM; DSS 8 ug; Na2HPO4/NaH2PO4 20 mM; sodium chloride 100 mM

sample_conditions_1: pH: 6; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-1H TOCSY	sample_1	isotropic	sample_conditions_1
2D 1H-1H ROESY	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC-TOCSY	sample_1	isotropic	sample_conditions_1
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-15N HSQC-TOCSY	sample_1	isotropic	sample_conditions_1
2D 1H-15N HSQC-ROESY	sample_1	isotropic	sample_conditions_1

Software:

TOPSPIN v4.0.5 - data collection and analysis

CARA v1.9 - chemical shift assignment

NMR spectrometers:

Bruker AVANCE NEO 700 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks