BMRB Entry 5170

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PDB ID: 1ju7
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR5170
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

NMR Structure and Dynamics of the RNA Binding Site for the Histone mRNA Stem-Loop Binding Protein

Deposition date:

2001-10-03

Original release date:

2002-05-06

Authors:

DeJong, E.; Marzluff, W.; Nikonowicz, E.

Citation:

Citation: DeJong, E.; Marzluff, W.; Nikonowicz, E.. "NMR Structure and Dynamics of the RNA-binding Site for the Histone mRNA Stem-Loop Binding Protein" RNA 8, 83-96 (2002).
PubMed: 11871662

Assembly members:

Assembly members:
Histone mRNA, polymer, 28 residues, Formula weight is not available

Natural source:

Natural source: Common Name: not available Taxonomy ID: not available Superkingdom: not available Kingdom: not available Genus/species: not available not available

Experimental source:

Experimental source: Production method: .

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Histone mRNA: GGCCCUUUUCAGGGCCCAGG GCCACCCA

Data sets:

assigned_chemical_shifts
- chemical_shift_set_1

Data type	Count
13C chemical shifts	128
15N chemical shifts	14
1H chemical shifts	139

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Histone mRNA	1

Entities:

Entity 1, Histone mRNA 28 residues - Formula weight is not available

1

G

C

U

C

2

A

G

C

A

G

3

G

C

A

C

A

Samples:

sample_1: Histone mRNA, [U-13C], 2.3 mM; KPi 20 mM; KCl 20 mM; EDTA 0.02 mM; D2O 100%

sample_2: Histone mRNA, [U-15N], 2.5 mM; KPi 20 mM; KCl 20 mM; EDTA 0.02 mM; D2O 10%; H2O 90%

sample_3: Histone mRNA, [U-13C], [U-2H]-H5',H5'', 2.0 mM; KPi 20 mM; KCl 20 mM; EDTA 0.02 mM; D2O 100%

sample_4: Histone mRNA 2.8 mM; KPi 20 mM; KCl 20 mM; EDTA 0.02 mM; D2O 100%

sample_cond_1: pH: 6.8; temperature: 280 K

Experiments:

Name	Sample	Sample state	Sample conditions
NOESY	not available	not available	sample_cond_1
3D 13C-separated NOESY	not available	not available	sample_cond_1
3D 15N-separated NOESY	not available	not available	sample_cond_1
DQF-COSY	not available	not available	sample_cond_1
HetCor	not available	not available	sample_cond_1

Software:

FELIX v980 - processing

X-PLOR v3.851 - refinement

NMR spectrometers:

Bruker AMX 500 MHz