BMRB Entry 51650

Name: Ded1p N-terminal IDR
Published: 2022-10-10

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR51650

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Ded1p N-terminal IDR

Deposition date:

2022-10-04

Original release date:

2022-10-10

Authors:

Schneider, Jakob

Citation:

Citation: schneider, Jakob. "Ded1p N-terminal IDR" to be published ., .-..

Assembly members:

Assembly members:
entity_1, polymer, 81 residues, Formula weight is not available

Natural source:

Natural source: Common Name: baker's yeast Taxonomy ID: 4932 Superkingdom: Eukaryota Kingdom: Fungi Genus/species: Saccharomyces cerevisiae

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pETM-11

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: MAELSEQVQNLSINDNNENG YVPPHLRGKPRSARNNSSNY NNNNGGYNGGRGGGSFFSNN RRGGYGNGGFFGGNNGGSRS N

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1

Data type	Count
13C chemical shifts	193
15N chemical shifts	69
1H chemical shifts	69

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Ded1p N-terminal IDR	1

Entities:

Entity 1, Ded1p N-terminal IDR 81 residues - Formula weight is not available

1

MET

ALA

GLU

LEU

SER

GLU

GLN

VAL

GLN

ASN

2

LEU

SER

ILE

ASN

ASP

ASN

GLU

ASN

GLY

3

TYR

VAL

PRO

HIS

LEU

ARG

GLY

LYS

PRO

4

ARG

SER

ALA

ARG

ASN

SER

ASN

TYR

5

ASN

GLY

TYR

ASN

GLY

6

ARG

GLY

SER

PHE

SER

ASN

7

ARG

GLY

TYR

GLY

ASN

GLY

PHE

8

PHE

GLY

ASN

GLY

SER

ARG

SER

9

ASN

Samples:

sample_1: Ded1p N-terminal IDR, [U-13C; U-15N], 300 uM; sodium chloride 125 mM; HEPES 20 mM; DTT 1 mM; sodium azide 0.03%

sample_conditions_1: ionic strength: 0.125 M; pH: 7.3; pressure: 1 atm; temperature: 277 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D HNCO	sample_1	isotropic	sample_conditions_1
3D CBCACONH	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D HN(CA)CO	sample_1	isotropic	sample_conditions_1
2D 1H-15N TROSY	sample_1	isotropic	sample_conditions_1
3D H(CCO)NH	sample_1	isotropic	sample_conditions_1

Software:

CARA - chemical shift assignment

NMR spectrometers:

Bruker AVANCE NEO 500 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks