BMRB Entry 5155

Name: NMR structure of the UBX domain from P47 (energy minimised average)
Published: 2001-10-18

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PDB ID: 1jru
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR5155
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

NMR structure of the UBX domain from P47 (energy minimised average)

Deposition date:

2001-09-17

Original release date:

2001-10-18

Authors:

Yuan, X.; Shaw, A.; Zhang, X.; Kondo, H.; Lally, J.; Freemont, P.; Matthews, S.

Citation:

Citation: Yuan, X.; Shaw, A.; Zhang, X.; Kondo, H.; Lally, J.; Freemont, P.; Matthews, S.. "Solution Structure and Interaction Surface of the C-terminal Domain from p47: A Major p97-cofactor Involved in SNARE Disassembly " J. Mol. Biol. 311, 255-263 (2001).
PubMed: 11478859

Assembly members:

Assembly members:
p47, polymer, 89 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Norway rat Taxonomy ID: 10116 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Rattus norvegicus

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
p47: KASSSILINEAEPTTNIQIR LADGGRLVQKFNHSHRISDI RLFIVDARPAMAATSFVLMT TFPNKELADENQTLKEANLL NAVIVQRLT

Data sets:

assigned_chemical_shifts
- chemical_shift_set_1

Data type	Count
1H chemical shifts	607
13C chemical shifts	174
15N chemical shifts	86

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	p47 protein	1

Entities:

Entity 1, p47 protein 89 residues - Formula weight is not available

1

LYS

ALA

SER

ILE

LEU

ILE

ASN

GLU

2

ALA

GLU

PRO

THR

ASN

ILE

GLN

ILE

ARG

3

LEU

ALA

ASP

GLY

ARG

LEU

VAL

GLN

LYS

4

PHE

ASN

HIS

SER

HIS

ARG

ILE

SER

ASP

ILE

5

ARG

LEU

PHE

ILE

VAL

ASP

ALA

ARG

PRO

ALA

6

MET

ALA

THR

SER

PHE

VAL

LEU

MET

THR

7

THR

PHE

PRO

ASN

LYS

GLU

LEU

ALA

ASP

GLU

8

ASN

GLN

THR

LEU

LYS

GLU

ALA

ASN

LEU

9

ASN

ALA

VAL

ILE

VAL

GLN

ARG

LEU

THR

Samples:

sample_1: p47, [U-13C; U-15N], 1 mM; NaAc 20 mM; H2O 90%; D2O 10%

sample_cond_1: pH: 5.2; temperature: 302 K; pressure: 1 atm

Experiments:

Name	Sample	Sample state	Sample conditions
HNCA	not available	not available	not available
HN(CO)CA	not available	not available	not available
HNCACB	not available	not available	not available
CBCA(CO)NH	not available	not available	not available
HBHA(CBCACO)NH	not available	not available	not available
3D 15N-separated NOESY	not available	not available	not available

Software:

AURELIA v2.1.5 - data analysis

NMRPipe - processing

XWINNMR - collection

NMRView v3.1.1 - data analysis

X-PLOR v3.853 - structure solution, refinement

NMR spectrometers:

Bruker DRX 500 MHz

BMRB	5876
PDB	1I42 1JRU 1S3S
DBJ	BAA21659 BAB28604 BAE23234
EMBL	CAA71742
GB	AAH50936 AAH72464 AAI06102 EDL05910 EDL05911
REF	NP_001278003 NP_114187 NP_938085 XP_003500001 XP_003500002
SP	O35987 Q9CZ44
AlphaFold	O35987 Q9CZ44