BMRB Entry 51504

Title:
Assignment of 1-44 residues of nucleocapsid protein of SARS-CoV-2
Deposition date:
2022-06-27
Original release date:
2022-09-13
Authors:
Ibanez de Opakua, Alain; Zweckstetter, Markus; Zachrdla, Milan
Citation:

Citation: Zachrdla, Milan; Savastano, Adriana; Ibanez de Opakua, Alain; Cima-Omori, Sol; Zweckstetter, Markus. "Contributions of the N-terminal intrinsically disordered region of the severe acute respiratory syndrome coronavirus 2 nucleocapsid protein to RNA-induced phase separation"  Protein Sci. 31, e4409-e4409 (2022).
PubMed: 36040256

Assembly members:

Assembly members:
entity_1, polymer, 44 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: SARS-CoV-2   Taxonomy ID: 2697049   Superkingdom: Viruses   Kingdom: not available   Genus/species: Betacoronavirus HCoV-SARS

Experimental source:

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: MSDNGPQNQRNAPRITFGGP SDSTGSNQNGERSGARSKQR RPQG

Data sets:
Data typeCount
13C chemical shifts81
15N chemical shifts38
1H chemical shifts90

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1peptide1

Entities:

Entity 1, peptide 44 residues - Formula weight is not available

1   METSERASPASNGLYPROGLNASNGLNARG
2   ASNALAPROARGILETHRPHEGLYGLYPRO
3   SERASPSERTHRGLYSERASNGLNASNGLY
4   GLUARGSERGLYALAARGSERLYSGLNARG
5   ARGPROGLNGLY

Samples:

sample_1: 1-44 residues of nucleocapsid protein of SARS-CoV-2 2 mM; D2O, [U-2H], 5%; sodium azide 0.01%; sodium phosphate 50 mM

sample_conditions_1: ionic strength: 100 mM; pH: 6.8; pressure: 1 atm; temperature: 278 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-1H TOCSYsample_1isotropicsample_conditions_1
2D 1H-1H NOESYsample_1isotropicsample_conditions_1
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
2D 1H-13C HSQCsample_1isotropicsample_conditions_1

Software:

TOPSPIN - collection, processing

SPARKY - chemical shift assignment

NMR spectrometers:

  • Bruker AVANCE III 700 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks