BMRB Entry 51473

Name: IL1R8
Published: 2022-08-08

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR51473

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

IL1R8

Deposition date:

2022-05-24

Original release date:

2022-08-08

Authors:

Lee, Eunjeong

Citation:

Citation: Lee, Eunjeong; Redzic, Jasmina; Nemkov, Travis; Saviola, Anthony; Dzieciatkowska, Monika; Hansen, Kirk; D'Alessandro, Angelo; Dinarello, Charles; Eisenmesser, Elan. "Human and Bacterial Toll-Interleukin Receptor Domains Exhibit Distinct Dynamic Features and Functions" Molecules 27, 4494-4494 (2022).
PubMed: 35889366

Assembly members:

Assembly members:
entity_1, polymer, 150 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pet27

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: DGKLYDAYVSYSDCPEDRKF VNFILKPQLERRRGYKLFLD DRDLLPRAEPSADLLVNLSR CRRLIVVLSDAFLSRAWCSH SFREGLCRLLELTRRPIFIT FEGQRRDPAHPALRLLRQHR HLVTLLLWRPGSVTPSSDFW KEVQLALPRK

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1

Data type	Count
13C chemical shifts	369
15N chemical shifts	125
1H chemical shifts	125

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	IL1R8	1

Entities:

Entity 1, IL1R8 150 residues - Formula weight is not available

1	ASP	GLY	LYS	LEU	TYR	ASP	ALA	TYR	VAL	SER
2	TYR	SER	ASP	CYS	PRO	GLU	ASP	ARG	LYS	PHE
3	VAL	ASN	PHE	ILE	LEU	LYS	PRO	GLN	LEU	GLU
4	ARG	ARG	ARG	GLY	TYR	LYS	LEU	PHE	LEU	ASP
5	ASP	ARG	ASP	LEU	LEU	PRO	ARG	ALA	GLU	PRO
6	SER	ALA	ASP	LEU	LEU	VAL	ASN	LEU	SER	ARG
7	CYS	ARG	ARG	LEU	ILE	VAL	VAL	LEU	SER	ASP
8	ALA	PHE	LEU	SER	ARG	ALA	TRP	CYS	SER	HIS
9	SER	PHE	ARG	GLU	GLY	LEU	CYS	ARG	LEU	LEU
10	GLU	LEU	THR	ARG	ARG	PRO	ILE	PHE	ILE	THR
11	PHE	GLU	GLY	GLN	ARG	ARG	ASP	PRO	ALA	HIS
12	PRO	ALA	LEU	ARG	LEU	LEU	ARG	GLN	HIS	ARG
13	HIS	LEU	VAL	THR	LEU	LEU	LEU	TRP	ARG	PRO
14	GLY	SER	VAL	THR	PRO	SER	SER	ASP	PHE	TRP
15	LYS	GLU	VAL	GLN	LEU	ALA	LEU	PRO	ARG	LYS

Samples:

sample_1: IL1R8, [U-13C; U-15N], 1 mM; DTT 1 mM; HEPES 50 mM; sodium chloride 150 mM

sample_conditions_1: ionic strength: 150 mM; pH: 7.5; pressure: 1 atm; temperature: 303 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D HNCA	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D HN(CO)CA	sample_1	isotropic	sample_conditions_1
3D HN(CO)CACB	sample_1	isotropic	sample_conditions_1

Software:

CcpNMR - chemical shift assignment

NMR spectrometers:

Bruker Avance 600 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks

1	ASP	GLY	LYS	LEU	TYR	ASP	ALA	TYR	VAL	SER
2	TYR	SER	ASP	CYS	PRO	GLU	ASP	ARG	LYS	PHE
3	VAL	ASN	PHE	ILE	LEU	LYS	PRO	GLN	LEU	GLU
4	ARG	ARG	ARG	GLY	TYR	LYS	LEU	PHE	LEU	ASP
5	ASP	ARG	ASP	LEU	LEU	PRO	ARG	ALA	GLU	PRO
6	SER	ALA	ASP	LEU	LEU	VAL	ASN	LEU	SER	ARG
7	CYS	ARG	ARG	LEU	ILE	VAL	VAL	LEU	SER	ASP
8	ALA	PHE	LEU	SER	ARG	ALA	TRP	CYS	SER	HIS
9	SER	PHE	ARG	GLU	GLY	LEU	CYS	ARG	LEU	LEU
10	GLU	LEU	THR	ARG	ARG	PRO	ILE	PHE	ILE	THR
11	PHE	GLU	GLY	GLN	ARG	ARG	ASP	PRO	ALA	HIS
12	PRO	ALA	LEU	ARG	LEU	LEU	ARG	GLN	HIS	ARG
13	HIS	LEU	VAL	THR	LEU	LEU	LEU	TRP	ARG	PRO
14	GLY	SER	VAL	THR	PRO	SER	SER	ASP	PHE	TRP
15	LYS	GLU	VAL	GLN	LEU	ALA	LEU	PRO	ARG	LYS

1	ASP	GLY	LYS	LEU	TYR	ASP	ALA	TYR	VAL	SER
2	TYR	SER	ASP	CYS	PRO	GLU	ASP	ARG	LYS	PHE
3	VAL	ASN	PHE	ILE	LEU	LYS	PRO	GLN	LEU	GLU
4	ARG	ARG	ARG	GLY	TYR	LYS	LEU	PHE	LEU	ASP
5	ASP	ARG	ASP	LEU	LEU	PRO	ARG	ALA	GLU	PRO
6	SER	ALA	ASP	LEU	LEU	VAL	ASN	LEU	SER	ARG
7	CYS	ARG	ARG	LEU	ILE	VAL	VAL	LEU	SER	ASP
8	ALA	PHE	LEU	SER	ARG	ALA	TRP	CYS	SER	HIS
9	SER	PHE	ARG	GLU	GLY	LEU	CYS	ARG	LEU	LEU
10	GLU	LEU	THR	ARG	ARG	PRO	ILE	PHE	ILE	THR
11	PHE	GLU	GLY	GLN	ARG	ARG	ASP	PRO	ALA	HIS
12	PRO	ALA	LEU	ARG	LEU	LEU	ARG	GLN	HIS	ARG
13	HIS	LEU	VAL	THR	LEU	LEU	LEU	TRP	ARG	PRO
14	GLY	SER	VAL	THR	PRO	SER	SER	ASP	PHE	TRP
15	LYS	GLU	VAL	GLN	LEU	ALA	LEU	PRO	ARG	LYS

1	ASP	GLY	LYS	LEU	TYR	ASP	ALA	TYR	VAL	SER
2	TYR	SER	ASP	CYS	PRO	GLU	ASP	ARG	LYS	PHE
3	VAL	ASN	PHE	ILE	LEU	LYS	PRO	GLN	LEU	GLU
4	ARG	ARG	ARG	GLY	TYR	LYS	LEU	PHE	LEU	ASP
5	ASP	ARG	ASP	LEU	LEU	PRO	ARG	ALA	GLU	PRO
6	SER	ALA	ASP	LEU	LEU	VAL	ASN	LEU	SER	ARG
7	CYS	ARG	ARG	LEU	ILE	VAL	VAL	LEU	SER	ASP
8	ALA	PHE	LEU	SER	ARG	ALA	TRP	CYS	SER	HIS
9	SER	PHE	ARG	GLU	GLY	LEU	CYS	ARG	LEU	LEU
10	GLU	LEU	THR	ARG	ARG	PRO	ILE	PHE	ILE	THR
11	PHE	GLU	GLY	GLN	ARG	ARG	ASP	PRO	ALA	HIS
12	PRO	ALA	LEU	ARG	LEU	LEU	ARG	GLN	HIS	ARG
13	HIS	LEU	VAL	THR	LEU	LEU	LEU	TRP	ARG	PRO
14	GLY	SER	VAL	THR	PRO	SER	SER	ASP	PHE	TRP
15	LYS	GLU	VAL	GLN	LEU	ALA	LEU	PRO	ARG	LYS