BMRB Entry 51349

Name: NPSL2_Frag2
Published: 2022-03-31

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR51349

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

NPSL2_Frag2

Deposition date:

2022-03-07

Original release date:

2022-03-31

Authors:

Liu, Yaping; Keane, Sarah

Citation:

Citation: Liu, Yaping; Munsayac, Aldrex; Hall, Ian; Keane, Sarah. "Solution structure of NPSL2, a regulatory element in the oncomiR-1 RNA" J. Mol. Biol. ., .-..

Assembly members:

Assembly members:
entity_1, polymer, 22 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: In vitro transcription Host organism: In vitro

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: GGAGGGAAACUCAAACCCCU CC

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1
- assigned_chemical_shifts_2

Data type	Count
13C chemical shifts	29
1H chemical shifts	170

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	NPSL2_Frag2	1

Entities:

Entity 1, NPSL2_Frag2 22 residues - Formula weight is not available

1

G

A

G

A

C

2

U

C

A

C

U

3

C

Samples:

sample_1: NPSL2_Frag2 500 uM; potassium phosphate 50 mM

sample_conditions_1: ionic strength: 0.05 M; pH: 7.5; pressure: 1 atm; temperature: 298 K

sample_conditions_2: ionic strength: 0.05 M; pH: 7.5; pressure: 1 atm; temperature: 288 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-13C HMQC	sample_1	isotropic	sample_conditions_2
2D 1H-1H TOCSY	sample_1	isotropic	sample_conditions_2
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_2
2D 1H-13C HMQC	sample_1	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1

Software:

TOPSPIN - collection

NMRPipe - processing

NMRFx Analyst - processing

NMRViewJ - chemical shift assignment

NMR spectrometers:

Bruker AVANCE NEO 600 MHz