BMRB Entry 51223

Name: 1H15N HSQC chemical shifts and Relaxation Parameters for Y99C MIF Homotrimers
Published: 2022-03-09

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR51223

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

1H15N HSQC chemical shifts and Relaxation Parameters for Y99C MIF Homotrimers

Deposition date:

2021-12-07

Original release date:

2022-03-09

Authors:

Skeens, Erin; Lisi, George

Citation:

Citation: Skeens, Erin; Pantouris, Georgios; Shah, Dilip; Manjula, Ramu; Ombrello, Michael; Maluf, N.; Bhandari, Vineet; Lisi, George; Lolis, Elias. "A Cysteine Variant at an Allosteric Site Alters MIF Dynamics and Biological Function in Homo- and Heterotrimeric Assemblies" Front. Mol. Biosci. 9, 783669-783669 (2022).
PubMed: 35252348

Assembly members:

Assembly members:
entity_1, polymer, 114 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET24a

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: PMFIVNTNVPRASVPDGFLS ELTQQLAQATGKPPQYIAVH VVPDQLMAFGGSSEPCALCS LHSIGKIGGAQNRSYSKLLC GLLAERLRISPDRVYINYCD MNAANVGWNNSTFA

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1
heteronucl_NOEs
- heteronucl_NOEs_1
heteronucl_T1_relaxation
- heteronucl_T1_relaxation_1
heteronucl_T2_relaxation
- heteronucl_T2_relaxation_1

Data type	Count
15N chemical shifts	94
1H chemical shifts	94
T1 relaxation values	83
T2 relaxation values	81
heteronuclear NOE values	82

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Y99C MIF chain 1	1
2	Y99C MIF chain 2	1
3	Y99C MIF chain 3	1

Entities:

Entity 1, Y99C MIF chain 1 114 residues - Formula weight is not available

1

PRO

MET

PHE

ILE

VAL

ASN

THR

ASN

VAL

PRO

2

ARG

ALA

SER

VAL

PRO

ASP

GLY

PHE

LEU

SER

3

GLU

LEU

THR

GLN

LEU

ALA

GLN

ALA

THR

4

GLY

LYS

PRO

GLN

TYR

ILE

ALA

VAL

HIS

5

VAL

PRO

ASP

GLN

LEU

MET

ALA

PHE

GLY

6

GLY

SER

GLU

PRO

CYS

ALA

LEU

CYS

SER

7

LEU

HIS

SER

ILE

GLY

LYS

ILE

GLY

ALA

8

GLN

ASN

ARG

SER

TYR

SER

LYS

LEU

CYS

9

GLY

LEU

ALA

GLU

ARG

LEU

ARG

ILE

SER

10

PRO

ASP

ARG

VAL

TYR

ILE

ASN

TYR

CYS

ASP

11

MET

ASN

ALA

ASN

VAL

GLY

TRP

ASN

12

SER

THR

PHE

ALA

Samples:

sample_1: Y99C MIF trimers, [U-99% 15N], 1.0 mM; sodium phosphate 20 mM; EDTA 1.0 mM; D2O 10%

sample_conditions_1: ionic strength: 20.0 mM; pH: 7.0; pressure: 1 atm; temperature: 303 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
T1/R1 relaxation	sample_1	isotropic	sample_conditions_1
T2/R2 relaxation	sample_1	isotropic	sample_conditions_1
1H-15N heteronoe	sample_1	isotropic	sample_conditions_1

Software:

NMRPipe - processing

NMRDraw - processing

NMRFAM-SPARKY - data analysis

NMR spectrometers:

Bruker Avance 600 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks