BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 51145

Title: K63-linked diubiquitin with 15N-labeled proximal ubiquitin interacting with ASCC2 CUE domain

Deposition date: 2021-10-16 Original release date: 2021-12-30

Authors: Lombardi, Patrick; Majumdar, Ananya; Wolberger, Cynthia

Citation: Lombardi, Patrick; Haile, Sara; Rusanov, Timur; Rodell, Rebecca; Anoh, Rita; Baer, Julia; Burke, Kate; Gray, Lauren; Hacker, Abigail; Kebreau, Kayla; Ngandu, Christine; Orland, Hannah; Osei-Asante, Emmanuella; Schmelyun, Dhane; Shorb, Devin; Syed, Shaheer; Veilleux, Julianna; Majumdar, Ananya; Mosammaparast, Nima; Wolberger, Cynthia. "The ASCC2 CUE domain contacts adjacent ubiquitins to recognize K63-linked polyubiquitin"  J. Biol. Chem. ., .-..

Assembly members:
entity_1, polymer, 153 residues, Formula weight is not available
entity_2, polymer, 55 residues, Formula weight is not available

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pET-3a

Entity Sequences (FASTA):
entity_1: MQIFVKTLTGKTITLEVEPS DTIENVKAKIQDKEGIPPDQ QRLIFAGRQLEDGRTLSDYN IQRESTLHLVLRLRGGMQIF VKTLTGKTITLEVEPSDTIE NVKAKIQDKEGIPPDQQRLI FAGKQLEDGRTLSDYNIQKE STLHLVLRLRGGD
entity_2: ELDSLISQVKDLLPDLGEGF ILACLEYYHYDPEQVINNIL EERLAPTLSQLDRNL

Data sets:
Data typeCount
15N chemical shifts70
1H chemical shifts70
molecule interaction chemical shift values66

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1K63-linked diubiquitin1
2ASCC2 CUE2

Entities:

Entity 1, K63-linked diubiquitin 153 residues - Formula weight is not available

1   METGLNILEPHEVALLYSTHRLEUTHRGLY
2   LYSTHRILETHRLEUGLUVALGLUPROSER
3   ASPTHRILEGLUASNVALLYSALALYSILE
4   GLNASPLYSGLUGLYILEPROPROASPGLN
5   GLNARGLEUILEPHEALAGLYARGGLNLEU
6   GLUASPGLYARGTHRLEUSERASPTYRASN
7   ILEGLNARGGLUSERTHRLEUHISLEUVAL
8   LEUARGLEUARGGLYGLYMETGLNILEPHE
9   VALLYSTHRLEUTHRGLYLYSTHRILETHR
10   LEUGLUVALGLUPROSERASPTHRILEGLU
11   ASNVALLYSALALYSILEGLNASPLYSGLU
12   GLYILEPROPROASPGLNGLNARGLEUILE
13   PHEALAGLYLYSGLNLEUGLUASPGLYARG
14   THRLEUSERASPTYRASNILEGLNLYSGLU
15   SERTHRLEUHISLEUVALLEUARGLEUARG
16   GLYGLYASP

Entity 2, ASCC2 CUE 55 residues - Formula weight is not available

1   GLULEUASPSERLEUILESERGLNVALLYS
2   ASPLEULEUPROASPLEUGLYGLUGLYPHE
3   ILELEUALACYSLEUGLUTYRTYRHISTYR
4   ASPPROGLUGLNVALILEASNASNILELEU
5   GLUGLUARGLEUALAPROTHRLEUSERGLN
6   LEUASPARGASNLEU

Samples:

sample_1: ASCC2 CUE domain 500 uM; K63-linked diubiquitin, [U-15N], 100 uM; Tris 20 mM; NaCl 100 mM; TCEP 200 mM

sample_2: ASCC2 CUE domain 200 uM; K63-linked diubiquitin, [U-15N], 100 uM; Tris 20 mM; NaCl 100 mM; TCEP 200 mM

sample_3: ASCC2 CUE domain 100 uM; K63-linked diubiquitin, [U-15N], 100 uM; Tris 20 mM; NaCl 100 mM; TCEP 200 mM

sample_4: ASCC2 CUE domain 30 uM; K63-linked diubiquitin, [U-15N], 100 uM; Tris 20 mM; NaCl 100 mM; TCEP 200 mM

sample_5: K63-linked diubiquitin, [U-15N], 100 uM; Tris 20 mM; NaCl 100 mM; TCEP 200 mM

sample_conditions_1: ionic strength: 0.11 M; pH: 7.0; pressure: 1 atm; temperature: 293 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1

Software:

NMRPipe - processing

CcpNMR - chemical shift assignment, data analysis, peak picking

NMR spectrometers:

  • Bruker AVANCE II 600 MHz

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts