BMRB Entry 50918

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR50918

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Title:
Isoleucine d1 methyl assignments for Actin bound with Ca-ATP
Deposition date:
2021-05-02
Original release date:
2022-03-28
Authors:
Zahm, Jacob; Ali, Rustam; Rosen, Michael
Citation:

Citation: Ali, Rustam; Zahm, Jacob; Rosen, Michael. "Bound nucleotide can control the dynamic architecture of monomeric actin"  Nat. Struct. Mol. Biol. 29, 320-328 (2022).
PubMed: 35332323

Assembly members:

Assembly members:
entity_1, polymer, 374 residues, Formula weight is not available
entity_ATP, non-polymer, 507.181 Da.
entity_CA, non-polymer, 40.078 Da.

Natural source:

Natural source:   Common Name: fruit fly   Taxonomy ID: 7227   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Drosophila melanogaster

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Pichia pastoris   Vector: pPICZ

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: DEEVAALVVDNGSGMCKAGF AGDDAPRAVFPSIVGRPRHQ GVMVGMGQKDSYVGDEAQSK RGILTLKYPIEHGIVTNWDD MEKIWHHTFYNELRVAPEEH PVLLTEAPLNPKANREKMTQ IMFETFNTPAMYVAIQAVLS LYASGRTTGIVLDSGDGVSH TVPIYEGYALPHAILRLDLA GRDLTDYLMKILTERGYSFT TTEEREIVRDIKEKLCYVAL DFEQEMATAASSSSLEKSYE LKDGQVITIGNERFRCPEAL FQPSFLGMEACGIHETTYNS IMKCDVDIRKDLYANTVLSG GTTMYPGIADRMQKEITALA PSTMKIKIIAPPERKYSVWI GGSILASLSTFQQMWISKQE YDESGPSIVHRKCF

Data sets:
Data typeCount
13C chemical shifts24
1H chemical shifts72

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1Actin-5C1
2ATP2
3CA3

Entities:

Entity 1, Actin-5C 374 residues - Formula weight is not available

1   ASPGLUGLUVALALAALALEUVALVALASP
2   ASNGLYSERGLYMETCYSLYSALAGLYPHE
3   ALAGLYASPASPALAPROARGALAVALPHE
4   PROSERILEVALGLYARGPROARGHISGLN
5   GLYVALMETVALGLYMETGLYGLNLYSASP
6   SERTYRVALGLYASPGLUALAGLNSERLYS
7   ARGGLYILELEUTHRLEULYSTYRPROILE
8   GLUHISGLYILEVALTHRASNTRPASPASP
9   METGLULYSILETRPHISHISTHRPHETYR
10   ASNGLULEUARGVALALAPROGLUGLUHIS
11   PROVALLEULEUTHRGLUALAPROLEUASN
12   PROLYSALAASNARGGLULYSMETTHRGLN
13   ILEMETPHEGLUTHRPHEASNTHRPROALA
14   METTYRVALALAILEGLNALAVALLEUSER
15   LEUTYRALASERGLYARGTHRTHRGLYILE
16   VALLEUASPSERGLYASPGLYVALSERHIS
17   THRVALPROILETYRGLUGLYTYRALALEU
18   PROHISALAILELEUARGLEUASPLEUALA
19   GLYARGASPLEUTHRASPTYRLEUMETLYS
20   ILELEUTHRGLUARGGLYTYRSERPHETHR
21   THRTHRGLUGLUARGGLUILEVALARGASP
22   ILELYSGLULYSLEUCYSTYRVALALALEU
23   ASPPHEGLUGLNGLUMETALATHRALAALA
24   SERSERSERSERLEUGLULYSSERTYRGLU
25   LEULYSASPGLYGLNVALILETHRILEGLY
26   ASNGLUARGPHEARGCYSPROGLUALALEU
27   PHEGLNPROSERPHELEUGLYMETGLUALA
28   CYSGLYILEHISGLUTHRTHRTYRASNSER
29   ILEMETLYSCYSASPVALASPILEARGLYS
30   ASPLEUTYRALAASNTHRVALLEUSERGLY
31   GLYTHRTHRMETTYRPROGLYILEALAASP
32   ARGMETGLNLYSGLUILETHRALALEUALA
33   PROSERTHRMETLYSILELYSILEILEALA
34   PROPROGLUARGLYSTYRSERVALTRPILE
35   GLYGLYSERILELEUALASERLEUSERTHR
36   PHEGLNGLNMETTRPILESERLYSGLNGLU
37   TYRASPGLUSERGLYPROSERILEVALHIS
38   ARGLYSCYSPHE

Entity 2, ATP - C10 H16 N5 O13 P3 - 507.181 Da.

1   ATP

Entity 3, CA - Ca - 40.078 Da.

1   CA

Samples:

sample_1: ACTIN, [U-2H]; [d1-methyl-13C, 1H-Ile], 100 uM; ATP 0.2 mM; HEPES (pH 7.0) 10 mM; CALCIUM CHLORIDE 0.2 mM; potassium chloride 50 mM; sodium azide 1 mM; TCEP 1 mM

sample_conditions_1: pH: 7.0; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-13C HMQCsample_1isotropicsample_conditions_1

Software:

NMRPipe v10.1 - processing

ANALYSIS v2.4.2 - chemical shift assignment, peak picking

NMR spectrometers:

  • Varian DD2 600 MHz