BMRB Entry 50887

Name: Backbone Assignments of HNH Nuclease from G. stearothermophilus Cas9
Published: 2021-12-14

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR50887

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Backbone Assignments of HNH Nuclease from G. stearothermophilus Cas9

Deposition date:

2021-04-09

Original release date:

2021-12-14

Authors:

Belato, Helen

Citation:

Citation: Belato, Helen; D'Ordine, Alexandra; Nierzwicki, Lukasz; Arantes, Pablo; Jogl, Gerwald; Palermo, Giulia; Lisi, George. "Structural and dynamic insights into the HNH nuclease of divergent Cas9 species" J. Struct. Biol. 214, 107814-107814 (2021).
PubMed: 34871741

Assembly members:

Assembly members:
entity_1, polymer, 108 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Geobacillus stearothermophilus Taxonomy ID: 1422 Superkingdom: Bacteria Kingdom: not available Genus/species: Geobacillus stearothermophilus

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET28a+

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: TGHDIVKFKLWSEQNGRCAY SLQPIEIERLLEPGYVEVDH VIPYSRSLDDSYTNKVLVLT RENREKGNRIPAEYLGVGTE RWQQFETFVLTNKQFSKKKR DRLLRLHY

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1

Data type	Count
13C chemical shifts	245
15N chemical shifts	85
1H chemical shifts	85

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	HNH	1

Entities:

Entity 1, HNH 108 residues - Formula weight is not available

1

THR

GLY

HIS

ASP

ILE

VAL

LYS

PHE

LYS

LEU

2

TRP

SER

GLU

GLN

ASN

GLY

ARG

CYS

ALA

TYR

3

SER

LEU

GLN

PRO

ILE

GLU

ILE

GLU

ARG

LEU

4

LEU

GLU

PRO

GLY

TYR

VAL

GLU

VAL

ASP

HIS

5

VAL

ILE

PRO

TYR

SER

ARG

SER

LEU

ASP

6

SER

TYR

THR

ASN

LYS

VAL

LEU

VAL

LEU

THR

7

ARG

GLU

ASN

ARG

GLU

LYS

GLY

ASN

ARG

ILE

8

PRO

ALA

GLU

TYR

LEU

GLY

VAL

GLY

THR

GLU

9

ARG

TRP

GLN

PHE

GLU

THR

PHE

VAL

LEU

10

THR

ASN

LYS

GLN

PHE

SER

LYS

ARG

11

ASP

ARG

LEU

ARG

LEU

HIS

TYR

Samples:

sample_1: GeoHNH, [U-100% 13C; U-100% 15N], 750 uM; HEPES 20 mM; potassium chloride 80 mM; DTT 1 mM; glycerol 5%; EDTA 1 mM

sample_conditions_1: pH: 7.4; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D HNCA	sample_1	isotropic	sample_conditions_1
3D HN(CO)CA	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D HN(CO)CACB	sample_1	isotropic	sample_conditions_1
3D HN(CA)CO	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1

Software:

NMRPipe - processing

NMR spectrometers:

Bruker AVANCE III 850 MHz
Bruker AVANCE NEO 600 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks