BMRB Entry 50446

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR50446

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Title:
1H, 13C and 15N Backbone Chemical Shift Assignments of SARS-CoV-2 Nsp3a
Deposition date:
2020-08-26
Original release date:
2020-12-23
Authors:
Salvi, Nicola; Guseva, Serafima; Mamigonian Bessa, Luiza; Camacho-Zarco, Aldo; Maurin, Damien; Marino Perez, Laura; Malki, Anas; Jensen, Malene; Schlundt, Andreas; Schwalbe, Harald; Blackledge, Martin
Citation:

Citation: Salvi, Nicola; Bessa, Luiza Mamigonian; Guseva, Serafima; Camacho-Zarco, Aldo; Maurin, Damien; Perez, Laura Marino; Malki, Anas; Hengesbach, Martin; Korn, Sophie Marianne; Schlundt, Andreas; Schwalbe, Harald; Blackledge, Martin. "1H, 13C and 15N backbone chemical shift assignments of SARS-CoV-2 nsp3a"  Biomol. NMR Assignments 15, 173-176 (2021).
PubMed: 33475934

Assembly members:

Assembly members:
entity_1, polymer, 209 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: SARS-CoV-2   Taxonomy ID: 2697049   Superkingdom: Viruses   Kingdom: not available   Genus/species: Betacoronavirus HCoV-SARS

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pET21b(+)

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: GAMAPTKVTFGDDTVIEVQG YKSVNITFELDERIDKVLNE KCSAYTVELGTEVNEFACVV ADAVIKTLQPVSELLTPLGI DLDEWSMATYYLFDESGEFK LASHMYCSFYPPDEDEEEGD CEEEEFEPSTQYEYGTEDDY QGKPLEFGATSAALQPEEEQ EEDWLDDDSQQTVGQQDGSE DNQTTTIQTIVEVQPQLEME LTPVVQTIE

Data sets:
Data typeCount
13C chemical shifts474
15N chemical shifts184
1H chemical shifts184

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1Nsp3a1

Entities:

Entity 1, Nsp3a 209 residues - Formula weight is not available

1   GLYALAMETALAPROTHRLYSVALTHRPHE
2   GLYASPASPTHRVALILEGLUVALGLNGLY
3   TYRLYSSERVALASNILETHRPHEGLULEU
4   ASPGLUARGILEASPLYSVALLEUASNGLU
5   LYSCYSSERALATYRTHRVALGLULEUGLY
6   THRGLUVALASNGLUPHEALACYSVALVAL
7   ALAASPALAVALILELYSTHRLEUGLNPRO
8   VALSERGLULEULEUTHRPROLEUGLYILE
9   ASPLEUASPGLUTRPSERMETALATHRTYR
10   TYRLEUPHEASPGLUSERGLYGLUPHELYS
11   LEUALASERHISMETTYRCYSSERPHETYR
12   PROPROASPGLUASPGLUGLUGLUGLYASP
13   CYSGLUGLUGLUGLUPHEGLUPROSERTHR
14   GLNTYRGLUTYRGLYTHRGLUASPASPTYR
15   GLNGLYLYSPROLEUGLUPHEGLYALATHR
16   SERALAALALEUGLNPROGLUGLUGLUGLN
17   GLUGLUASPTRPLEUASPASPASPSERGLN
18   GLNTHRVALGLYGLNGLNASPGLYSERGLU
19   ASPASNGLNTHRTHRTHRILEGLNTHRILE
20   VALGLUVALGLNPROGLNLEUGLUMETGLU
21   LEUTHRPROVALVALGLNTHRILEGLU

Samples:

sample_1: SARS-CoV-2 Nsp3a, [U-100% 13C; U-100% 15N], 632 uM

sample_conditions_1: ionic strength: 0.15 M; pH: 6.5; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
3D BT-HNCOsample_1isotropicsample_conditions_1
3D BT-HN(CA)COsample_1isotropicsample_conditions_1
3D BT-HN(CO)CACBsample_1isotropicsample_conditions_1
3D BT-iHNCACBsample_1isotropicsample_conditions_1
3D BEST-HNCAsample_1isotropicsample_conditions_1
3D BEST-HN(CO)CAsample_1isotropicsample_conditions_1

Software:

TOPSPIN v3.5pl6 - collection

NMRFx Analyst - processing

CcpNMR vv3 - peak picking

NMRFAM-SPARKY - chemical shift assignment

I-PINE - chemical shift assignment

NMR spectrometers:

  • Bruker AVANCE III 850 MHz

Related Database Links:

NCBI NC_045512.2

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks