BMRB Entry 5018

Name: Solution Structure of the Tumor Necrosis Factor Receptor-1 Death Domain
Published: 2002-05-09

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PDB ID: 1ich
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR5018
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Nicholas Rego and David Koes
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution Structure of the Tumor Necrosis Factor Receptor-1 Death Domain

Deposition date:

2001-05-21

Original release date:

2002-05-09

Authors:

Sukits, S.; Lin, L.-L.; Hsu, S.; Malakian, K.; Powers, R.; Xu, G.-Y.

Citation:

Citation: Sukits, S.; Lin, L.-L.; Hsu, S.; Malakian, K.; Powers, R.; Xu, G.-Y.. "Solution Structure of the Tumor Necrosis Factor Receptor-1 Death Domain" J. Mol. Biol. 310, 895-906 (2001).
PubMed: 11453696

Assembly members:

Assembly members:
Tumor Necrosis Factor Receptor-1, polymer, 112 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Tumor Necrosis Factor Receptor-1: MAHKPQSLDTDDPATLYAVV ENVPPLRWKEFVKRLGLSDH EIDRLELQNGRCLREAQYSM LATWRRRTPRREATLELLGR VLRDMDLLGCLEDIEEALCG PAALPPAPSLLR

Data sets:

assigned_chemical_shifts
- chemical_shift_set_1

Data type	Count
1H chemical shifts	573
13C chemical shifts	431
15N chemical shifts	98

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	TUMOR NECROSIS FACTOR RECEPTOR-1	1

Entities:

Entity 1, TUMOR NECROSIS FACTOR RECEPTOR-1 112 residues - Formula weight is not available

1

MET

ALA

HIS

LYS

PRO

GLN

SER

LEU

ASP

THR

2

ASP

PRO

ALA

THR

LEU

TYR

ALA

VAL

3

GLU

ASN

VAL

PRO

LEU

ARG

TRP

LYS

GLU

4

PHE

VAL

LYS

ARG

LEU

GLY

LEU

SER

ASP

HIS

5

GLU

ILE

ASP

ARG

LEU

GLU

LEU

GLN

ASN

GLY

6

ARG

CYS

LEU

ARG

GLU

ALA

GLN

TYR

SER

MET

7

LEU

ALA

THR

TRP

ARG

THR

PRO

ARG

8

ARG

GLU

ALA

THR

LEU

GLU

LEU

GLY

ARG

9

VAL

LEU

ARG

ASP

MET

ASP

LEU

GLY

CYS

10

LEU

GLU

ASP

ILE

GLU

ALA

LEU

CYS

GLY

11

PRO

ALA

LEU

PRO

ALA

PRO

SER

LEU

12

LEU

ARG

Samples:

sample_1: Tumor Necrosis Factor Receptor-1 1 mM; sodium acetate 10 mM; DTT 10 mM

sample_cond_1: pH: 4.0; temperature: 308 K; ionic strength: 10 mM; pressure: 1 atm

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	not available	not available	not available
3D 13C-separated NOESY	not available	not available	not available
4D 13C-separated NOESY	not available	not available	not available

Software:

X-PLOR v9.8 - structure solution

NMRPipe v1.8 - processing

pipp v4.2.2 - data analysis

NMR spectrometers:

Varian UNITYplus 600 MHz

PDB	1ICH
DBJ	BAF83777 BAG37891 BAG51763 BAG60879 BAG65321
EMBL	CAA39021
GB	AAA03210 AAA36753 AAA36754 AAA36756 AAA61201
REF	NP_001056 XP_002822854 XP_004052596 XP_007965520 XP_008971992
SP	P19438
AlphaFold	P19438