BMRB Entry 50064

Title:
1H, 13C, and 15N Chemical Shift Assignments for hairpin RNA Rest16
Deposition date:
2019-10-09
Original release date:
2021-02-02
Authors:
Wang, Yanjiao; Han, Ge; Jiang, Xiuying; Yuwen, Tairan; Al-Hashimi, Hashim; Xue, Yi
Citation:

Citation: Wang, Yanjiao; Han, Ge; Jiang, Xiuying; Yuwen, Tairan; Xue, Yi. "Chemical shift prediction of RNA imino groups: application toward characterizing RNA excited states"  Nat. Commun. 12, 1595-1595 (2021).
PubMed: 33707433

Assembly members:

Assembly members:
hairpin RNA Rest16, polymer, 30 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: not available   Taxonomy ID: not available   Superkingdom: not available   Kingdom: not available   Genus/species: not available not available

Experimental source:

Experimental source:   Production method: in vitro transcription   Host organism: in vitro transcription

Entity Sequences (FASTA):

Entity Sequences (FASTA):
hairpin RNA Rest16: GGAGGCGGUGUUCUUCGGGA CACUGCCUCC

Data sets:
Data typeCount
15N chemical shifts16
1H chemical shifts16

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1Rest161

Entities:

Entity 1, Rest16 30 residues - Formula weight is not available

1   GGAGGCGGUG
2   UUCUUCGGGA
3   CACUGCCUCC

Samples:

sample_1: RNA(30-mer) 2,71 mM; sodium phosphate 10 mM; EDTA 0.01 mM; H2O 90%; D2O 10%

sample_conditions_1: ionic strength: 10 mM; pH: 6.4; pressure: 1 atm; temperature: 283.15 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HMQCsample_1isotropicsample_conditions_1
2D 1H-1H NOESYsample_1isotropicsample_conditions_1

Software:

TOPSPIN, Bruker Biospin - collection

SPARKY, Goddard - chemical shift assignment, peak picking

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

NMR spectrometers:

  • Bruker AVANCE III HD 600MHz MHz
  • Bruker AVANCE III HD 800MHZ MHz