BMRB Entry 50035

Name: Backbone 1H, 13C, and 15N Chemical Shift Assignments for dL3D1
Published: 2021-06-13

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR50035

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Backbone 1H, 13C, and 15N Chemical Shift Assignments for dL3D1

Deposition date:

2019-10-06

Original release date:

2021-06-13

Authors:

Zhang, Shengnan

Citation:

Citation: Zhang, Shengnan; Liu, Yuqing; Jia, Chunyu; Lim, Yeh-Jun; Feng, Guoqin; Xu, Enquan; Kimura, Yasuyoshi; Long, Houfang; Tao, Youqi; Zhao, Chunyu; Wang, Chuchu; Liu, Zhenying; Hu, Jin-Jian; Ma, Mengrong; Jiang, Lin; Li, Dan; Wang, Renxiao; Dawson, Valina; Dawson, Ted; Li, Yan-Mei; Mao, Xiaobo; Liu, Cong. "Backbone 1H, 13C, and 15N Chemical Shift Assignments for dL3D1" PNAS ., .-..

Assembly members:

Assembly members:
dL3D1, polymer, 125 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET28a(+)

Entity Sequences (FASTA):

Entity Sequences (FASTA):
dL3D1: QGSGPGKELPVVWAQEGAPV HLPCSLKSPNLDPNFLRRGG VIWQHQPDSGQPTGRYTVLS VAPGGLRSGRQPLHPHVQLE ERGLQRGDFSLWLRPALRTD AGEYHATVRLPNRALSCSLR LRVGQ

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1

Data type	Count
13C chemical shifts	215
15N chemical shifts	100
1H chemical shifts	100

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	dL3D1	1

Entities:

Entity 1, dL3D1 125 residues - Formula weight is not available

1

GLN

GLY

SER

GLY

PRO

GLY

LYS

GLU

LEU

PRO

2

VAL

TRP

ALA

GLN

GLU

GLY

ALA

PRO

VAL

3

HIS

LEU

PRO

CYS

SER

LEU

LYS

SER

PRO

ASN

4

LEU

ASP

PRO

ASN

PHE

LEU

ARG

GLY

5

VAL

ILE

TRP

GLN

HIS

GLN

PRO

ASP

SER

GLY

6

GLN

PRO

THR

GLY

ARG

TYR

THR

VAL

LEU

SER

7

VAL

ALA

PRO

GLY

LEU

ARG

SER

GLY

ARG

8

GLN

PRO

LEU

HIS

PRO

HIS

VAL

GLN

LEU

GLU

9

GLU

ARG

GLY

LEU

GLN

ARG

GLY

ASP

PHE

SER

10

LEU

TRP

LEU

ARG

PRO

ALA

LEU

ARG

THR

ASP

11

ALA

GLY

GLU

TYR

HIS

ALA

THR

VAL

ARG

LEU

12

PRO

ASN

ARG

ALA

LEU

SER

CYS

SER

LEU

ARG

13

LEU

ARG

VAL

GLY

GLN

Samples:

sample_1: sodium phosphate 25 mM; sodium chloride 50 mM; D2O, [U-2H], 10%; entity_1, [U-99% 13C; U-99% 15N], 150 mM

sample_conditions_1: pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1

Software:

NMRView, Johnson, One Moon Scientific - chemical shift assignment

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

NMRDraw, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

NMR spectrometers:

Bruker Avance 600 MHz
Bruker Avance 900 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks