BMRB Entry 4951

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PDB ID: 1qa5
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR4951
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Nicholas Rego and David Koes
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Structure of the Anchor-Domain of Myristoylated and Non-myristoylated HIV-1 Nef Protein

Deposition date:

2001-01-31

Original release date:

2001-03-09

Authors:

Geyer, Matthias; Munte, Claudia; Kalbitzer, Hans

Citation:

Citation: Geyer, Matthias; Munte, Claudia; Schorr, Jacqueline; Kellner, Roland; Kalbitzer, Hans. "Structure of the Anchor-Domain of Myristoylated and Non-myristoylated HIV-1 Nef Protein" J. Mol. Biol. 289, 123-138 (1999).

Assembly members:

Assembly members:
HIV-1 Negative Factor, polymer, 58 residues, 6022 Da.

Natural source:

Natural source: Common Name: Human immunodeficiency virus type 1 Taxonomy ID: 11676 Superkingdom: viruses Kingdom: not available Genus/species: HIV-1 BEN allele (Nef_Hv112)

Experimental source:

Experimental source: Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
HIV-1 Negative Factor: XGGKWSKSSVVGWPAVRERM RRAEPAADGVGAASRDLEKH GAITSSNTAANNAACAWX

Data sets:

assigned_chemical_shifts
- shift_set_1

Data type	Count
1H chemical shifts	410

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	myristoylated Nef anchor domain (Myr-2-57)	1

Entities:

Entity 1, myristoylated Nef anchor domain (Myr-2-57) 58 residues - 6022 Da.

1

MYR

GLY

LYS

TRP

SER

LYS

SER

VAL

2

VAL

GLY

TRP

PRO

ALA

VAL

ARG

GLU

ARG

MET

3

ARG

ALA

GLU

PRO

ALA

ASP

GLY

VAL

4

GLY

ALA

SER

ARG

ASP

LEU

GLU

LYS

HIS

5

GLY

ALA

ILE

THR

SER

ASN

THR

ALA

6

ASN

ALA

CYS

ALA

TRP

NH2

Samples:

sample_1: HIV-1 Negative Factor 0.37 mM

Ex-cond_1: pH: 4.6; temperature: 285 K

Experiments:

Name	Sample	Sample state	Sample conditions
1H-1H NOESY	sample_1	not available	Ex-cond_1
ROESY	sample_1	not available	Ex-cond_1
TOCSY	sample_1	not available	Ex-cond_1
COSY	sample_1	not available	Ex-cond_1

Software:

AURELIA - automated peak assignments

NMR spectrometers:

Bruker DMX Avance 800 MHz
Bruker AMX 500 MHz

BMRB	4950
PDB	1QA4 1QA5
DBJ	BAC02670.1 BAC02671.1
EMBL	CAA26947.1
GenBank	AAA44206.1 AAA45001.1 AAB59874.1 AAD02461.1
PIR	S03245
PRF	1103299A
SWISS-PROT	P04324 P05854 P03404