BMRB Entry 4917

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PDB ID: 1bv2
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR4917
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of a lipid transfer protein extracted from rice seeds. Comparison with homologous proteins

Deposition date:

2000-12-12

Original release date:

2001-01-09

Authors:

Poznanski, Jarek

Citation:

Citation: Poznanski, Jaroslaw; Sodano, Patric; Suh, Se; Lee, Jae; Ptak, Marius; Vovelle, Francoise. "Solution structure of a lipid transfer protein extracted from rice seeds. Comparison with homologous proteins" Eur. J. Biochem. 259, 692-708 (1999).
PubMed: 10092854

Assembly members:

Assembly members:
Nonspecific Lipid Transfer Protein, polymer, 91 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Rice Taxonomy ID: 4530 Superkingdom: Eukaryota Kingdom: Viridiplantae Genus/species: Oryza sativa

Experimental source:

Experimental source: Production method: purified from the natural source

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Nonspecific Lipid Transfer Protein: ITCGQVNSAVGPCLTYARGG AGPSAACCSGVRSLKAAAST TADRRTACNCLKNAARGIKG LNAGNAASIPSKCGVSVPYT ISASIDCSRVS

Data sets:

assigned_chemical_shifts
- shift_rtp25
- shift_rtp10
coupling_constants
- J_values_rtp25

Data type	Count
1H chemical shifts	1110
coupling constants	61

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	rice ns-LTP	1

Entities:

Entity 1, rice ns-LTP 91 residues - Formula weight is not available

1

ILE

THR

CYS

GLY

GLN

VAL

ASN

SER

ALA

VAL

2

GLY

PRO

CYS

LEU

THR

TYR

ALA

ARG

GLY

3

ALA

GLY

PRO

SER

ALA

CYS

SER

GLY

4

VAL

ARG

SER

LEU

LYS

ALA

SER

THR

5

THR

ALA

ASP

ARG

THR

ALA

CYS

ASN

CYS

6

LEU

LYS

ASN

ALA

ARG

GLY

ILE

LYS

GLY

7

LEU

ASN

ALA

GLY

ASN

ALA

SER

ILE

PRO

8

SER

LYS

CYS

GLY

VAL

SER

VAL

PRO

TYR

THR

9

ILE

SER

ALA

SER

ILE

ASP

CYS

SER

ARG

VAL

10

SER

Samples:

sample_1: Nonspecific Lipid Transfer Protein 5 mM; phosphate buffer 50 mM

t25: pH*: 6.4; temperature: 298 K

t10: pH*: 6.4; temperature: 283 K

Experiments:

Name	Sample	Sample state	Sample conditions
COSY	sample_1	not available	not available
TOCSY	sample_1	not available	not available
NOESY	sample_1	not available	not available
P-COSY	sample_1	not available	not available
2Q-COSY	sample_1	not available	not available

Software:

UXNMR v930601.3 - Processing

XEASY v1.3.11 - signal assignment

DIANA v1.? - simulated annealing in the redac strategy

X-PLOR v3.1 - final refinement

NMR spectrometers:

Bruker AMX 500 MHz