BMRB Entry 4835

Name: NMR Structure of the palindromic DNA decamer D(GCGTTAACGC)2
Published: 2000-12-07

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR4835

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

NMR Structure of the palindromic DNA decamer D(GCGTTAACGC)2

Deposition date:

2000-09-19

Original release date:

2000-12-07

Authors:

Smith, J.; Tsui, V.; Chazin, W.; Case, D.

Citation:

Citation: Smith, Jarrod. "DNA structure by 1H NMR methods: Studies of d(GCGTTAACGC)2" Thesis The Scripps Research Institute (1999).

Assembly members:

Assembly members:
5'-d(*GP*CP*GP*TP*TP*AP*AP*CP*GP*C)-3', polymer, 10 residues, Formula weight is not available

Natural source:

Natural source: Common Name: not available Taxonomy ID: not available Superkingdom: not available Kingdom: not available Genus/species: not available not available

Experimental source:

Experimental source: Production method: .

Entity Sequences (FASTA):

Entity Sequences (FASTA):
5'-d(*GP*CP*GP*TP*TP*AP*AP*CP*GP*C)-3': GCGTTAACGC

Data sets:

assigned_chemical_shifts
- chemical_shift_set_1

Data type	Count
1H chemical shifts	82

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	GCG10 strand one	1
2	GCG10 strand two	1

Entities:

Entity 1, GCG10 strand one 10 residues - Formula weight is not available

1

DG

DC

DG

DT

DA

DC

DG

DC

Samples:

sample_1: 5'-d(*GP*CP*GP*TP*TP*AP*AP*CP*GP*C)-3' 2 mM; Na3PO4 20 mM; NaCl 50 mM; NaN3 0.1%; D2O 99.9%

sample_2: 5'-d(*GP*CP*GP*TP*TP*AP*AP*CP*GP*C)-3' 2 mM; Na3PO4 20 mM; NaCl 50 mM; NaN3 0.1%; D2O 5%; H2O 95%

sample_cond_1: ionic strength: 70 mM; pH: 7; temperature: 300 K

Experiments:

Name	Sample	Sample state	Sample conditions
Double-Quantum	not available	not available	sample_cond_1
DQF-COSY	not available	not available	sample_cond_1
E-COSY	not available	not available	sample_cond_1
2D NOESY	not available	not available	sample_cond_1

Software:

FELIX v95 - processing

NAB v2.1 - structure calculation

AMBER v5.0 - refinement, iterative matrix relaxation

NMR spectrometers:

Bruker AMX 500 MHz