Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR4734
NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry
Citation: Cerdan, Rachel; Payet, Dominique; Yang, Ji-Chun; Travers, Andrew; Neuhaus, David. "HMG-D complexed to a bulge DNA: an NMR study" Protein Sci. ., .-. (2000).
Assembly members:
High Mobility Protein of Drosophila, polymer, 112 residues, Formula weight is not available
bulge DNA 12/14mer, polymer, 14 residues, Formula weight is not available
bulge DNA 12/14mer, polymer, 12 residues, Formula weight is not available
Natural source: Common Name: fruit fly Taxonomy ID: 7227 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Drosophila melanogaster
Experimental source: Production method: recombinant technology Host organism: Escherichia coli
Entity Sequences (FASTA):
High Mobility Protein of Drosophila: MSDKPKRPLSAYMLWLNSAR
ESIKRENPGIKVTEVAKRGG
ELWRAMKDKSEWEAKAAKAK
DDYDRAVKEFEANGGSSAAN
GGGAKKRAKPAKKVAKKSKK
EESDEDDDDESE
bulge DNA 12/14mer: CGATATTAAGAGCC
bulge DNA 12/14mer: GGCTCAATATCG
Data type | Count |
1H chemical shifts | 455 |
13C chemical shifts | 46 |
15N chemical shifts | 80 |
Entity Assembly ID | Entity Name | Entity ID |
---|---|---|
1 | HMG-D protein | 1 |
2 | bulge DNA 12/14mer strand 1 | 2 |
3 | bulge DNA 12/14mer strand 2 | 3 |
Entity 1, HMG-D protein 112 residues - Formula weight is not available
1 | MET | SER | ASP | LYS | PRO | LYS | ARG | PRO | LEU | SER | ||||
2 | ALA | TYR | MET | LEU | TRP | LEU | ASN | SER | ALA | ARG | ||||
3 | GLU | SER | ILE | LYS | ARG | GLU | ASN | PRO | GLY | ILE | ||||
4 | LYS | VAL | THR | GLU | VAL | ALA | LYS | ARG | GLY | GLY | ||||
5 | GLU | LEU | TRP | ARG | ALA | MET | LYS | ASP | LYS | SER | ||||
6 | GLU | TRP | GLU | ALA | LYS | ALA | ALA | LYS | ALA | LYS | ||||
7 | ASP | ASP | TYR | ASP | ARG | ALA | VAL | LYS | GLU | PHE | ||||
8 | GLU | ALA | ASN | GLY | GLY | SER | SER | ALA | ALA | ASN | ||||
9 | GLY | GLY | GLY | ALA | LYS | LYS | ARG | ALA | LYS | PRO | ||||
10 | ALA | LYS | LYS | VAL | ALA | LYS | LYS | SER | LYS | LYS | ||||
11 | GLU | GLU | SER | ASP | GLU | ASP | ASP | ASP | ASP | GLU | ||||
12 | SER | GLU |
Entity 2, bulge DNA 12/14mer strand 1 14 residues - Formula weight is not available
1 | DC | DG | DA | DT | DA | DT | DT | DA | DA | DG | ||||
2 | DA | DG | DC | DC |
Entity 3, bulge DNA 12/14mer strand 2 12 residues - Formula weight is not available
1 | DG | DG | DC | DT | DC | DA | DA | DT | DA | DT | ||||
2 | DC | DG |
Download HSQC peak lists in one of the following formats:
CSV: Backbone
or all simulated peaks
SPARKY: Backbone
or all simulated peaks