BMRB Entry 4711

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR4711

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

NMR backbone assignments of the cold-regulated RNA-binding protein, RbpA1, in the cyanobacterium, Anabaena variabilis M3

Deposition date:

2000-04-10

Original release date:

2000-09-25

Authors:

Morita, Hayato; Murakami, Toshihide; Uegaki, Koichi; Yamazaki, Toshio; Sato, Naoki; Kyogoku, Yoshimasa; Hayashi, Hidenori

Citation:

Citation: Morita, Eugene; Murakami, Toshihide; Uegaki, Koichi; Yamazaki, Toshio; Sato, Naoki; Kyogoku, Yoshimasa; Hayashi, Hidenori. "Letter to the Editor: NMR backbone assignments of the cold-regulated RNA-binding protein, RbpA1, in the cyanobacterium, Anabaena variabilis M3" J. Biomol. NMR 17, 351-352 (2000).

Assembly members:

Assembly members:
RNA-binding protein, polymer, 101 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Anabaena variabilis M3 Taxonomy ID: 1172 Superkingdom: Eubacteria Kingdom: not available Genus/species: Anabaena variabilis

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: peT-21b

Entity Sequences (FASTA):

Entity Sequences (FASTA):
RNA-binding protein: SIYVGNLSYEVTQDTLSAVF AEYGTVKRVQLPTDRETGQP RGFGFVEMGSEAEEAAAIEA LDGAEWMGRDLKVNKAKPRE DRGPSGGNRGGYGGGGGRNR Y

Data sets:

assigned_chemical_shifts
- chemical_shifts_set_1

Data type	Count
13C chemical shifts	101
15N chemical shifts	96
1H chemical shifts	96

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	RNA-binding protein	1

Entities:

Entity 1, RNA-binding protein 101 residues - Formula weight is not available

1

SER

ILE

TYR

VAL

GLY

ASN

LEU

SER

TYR

GLU

2

VAL

THR

GLN

ASP

THR

LEU

SER

ALA

VAL

PHE

3

ALA

GLU

TYR

GLY

THR

VAL

LYS

ARG

VAL

GLN

4

LEU

PRO

THR

ASP

ARG

GLU

THR

GLY

GLN

PRO

5

ARG

GLY

PHE

GLY

PHE

VAL

GLU

MET

GLY

SER

6

GLU

ALA

GLU

ALA

ILE

GLU

ALA

7

LEU

ASP

GLY

ALA

GLU

TRP

MET

GLY

ARG

ASP

8

LEU

LYS

VAL

ASN

LYS

ALA

LYS

PRO

ARG

GLU

9

ASP

ARG

GLY

PRO

SER

GLY

ASN

ARG

GLY

10

GLY

TYR

GLY

ARG

ASN

ARG

11

TYR

Samples:

sample_1: RNA-binding protein, [U-13C; U-15N], 0.5 mM; H2O 90%; D2O 10%

cond_1: pH: 6.9; temperature: 303 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N_HSQC	not available	not available	not available
3D HNCACB	not available	not available	not available
3D CBCA(CO)NH	not available	not available	not available

Software:

NMRPipe v1.6, NIH - peak picking and assignments

NMR spectrometers:

Bruker DMX 500 MHz

DBJ	BAA04563 BAB72698
GB	ABA24239
REF	WP_010994915
SP	Q44560
AlphaFold	Q44560