BMRB Entry 4670

Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR4670

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Sequence-specific 1H,13C and 15N chemical shift backbone NMR assignment and secondary structure of the Arabidopsis thaliana PIN1At

Deposition date:

2000-03-16

Original release date:

2000-04-12

Authors:

Landrieu, Isabelle; Wieruszeski, Jean-Michel; Odaert, Benoit; Inze, Dirk; Lippens, Guy

Citation:

Citation: Landrieu, Isabelle; Wieruszeski, Jean-Michel; Odaert, Benoit; Inze, Dirk; Grzesiek, Stephan; Lippens, Guy. "Letter to the Editor: Sequence-specific 1H, 13C and 15N chemical shift backbone NMR assignment and secondary structure of the Arabidopsis thaliana PIN1At protein" J. Biomol. NMR 17, 271-272 (2000).

Assembly members:

Assembly members:
Arabidopsis thaliana prolyl cis/trans isomerase, polymer, 120 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Arabidopsis thaliana Taxonomy ID: 3702 Superkingdom: Eukaryota Kingdom: Viridiplantae Genus/species: Arabidopsis thaliana

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Arabidopsis thaliana prolyl cis/trans isomerase: HMASRDQVKASHILIKHQGS RRKASWKDPEGKIILTTTRE AAVEQLKSIREDIVSGKANF EEVATRVSDCSSAKRGGDLG SFGRGQMQKPFEEATYALKV GDISDIVDTDSGVHIIKRTA

Data sets:

assigned_chemical_shifts
- shift_set_1

Data type	Count
13C chemical shifts	393
15N chemical shifts	103
1H chemical shifts	648

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	PIN1At	1

Entities:

Entity 1, PIN1At 120 residues - Formula weight is not available

1	HIS	MET	ALA	SER	ARG	ASP	GLN	VAL	LYS	ALA
2	SER	HIS	ILE	LEU	ILE	LYS	HIS	GLN	GLY	SER
3	ARG	ARG	LYS	ALA	SER	TRP	LYS	ASP	PRO	GLU
4	GLY	LYS	ILE	ILE	LEU	THR	THR	THR	ARG	GLU
5	ALA	ALA	VAL	GLU	GLN	LEU	LYS	SER	ILE	ARG
6	GLU	ASP	ILE	VAL	SER	GLY	LYS	ALA	ASN	PHE
7	GLU	GLU	VAL	ALA	THR	ARG	VAL	SER	ASP	CYS
8	SER	SER	ALA	LYS	ARG	GLY	GLY	ASP	LEU	GLY
9	SER	PHE	GLY	ARG	GLY	GLN	MET	GLN	LYS	PRO
10	PHE	GLU	GLU	ALA	THR	TYR	ALA	LEU	LYS	VAL
11	GLY	ASP	ILE	SER	ASP	ILE	VAL	ASP	THR	ASP
12	SER	GLY	VAL	HIS	ILE	ILE	LYS	ARG	THR	ALA

Samples:

sample_1: Arabidopsis thaliana prolyl cis/trans isomerase, [U-98% 15N], 0.5 – 0.9 mM

sample_2: Arabidopsis thaliana prolyl cis/trans isomerase, [U-98% 13C], 0.5 – 0.9 mM

sample_3: Arabidopsis thaliana prolyl cis/trans isomerase, [U-98% 15N; U-13C], 0.5 – 0.9 mM

Cond_1: pH: 6.3; temperature: 293 K

Experiments:

Name	Sample	Sample state	Sample conditions
not available	not available	not available	Cond_1

Software:

No software information available

NMR spectrometers:

unknown unknown 0 MHz

PDB	1J6Y
DBJ	BAJ34365
GB	AAD20122 AAK26028 AAL07163 AAL09755 AAM61615
REF	NP_179395 XP_002884105 XP_006409205
SP	Q9SL42
AlphaFold	Q9SL42

1	HIS	MET	ALA	SER	ARG	ASP	GLN	VAL	LYS	ALA
2	SER	HIS	ILE	LEU	ILE	LYS	HIS	GLN	GLY	SER
3	ARG	ARG	LYS	ALA	SER	TRP	LYS	ASP	PRO	GLU
4	GLY	LYS	ILE	ILE	LEU	THR	THR	THR	ARG	GLU
5	ALA	ALA	VAL	GLU	GLN	LEU	LYS	SER	ILE	ARG
6	GLU	ASP	ILE	VAL	SER	GLY	LYS	ALA	ASN	PHE
7	GLU	GLU	VAL	ALA	THR	ARG	VAL	SER	ASP	CYS
8	SER	SER	ALA	LYS	ARG	GLY	GLY	ASP	LEU	GLY
9	SER	PHE	GLY	ARG	GLY	GLN	MET	GLN	LYS	PRO
10	PHE	GLU	GLU	ALA	THR	TYR	ALA	LEU	LYS	VAL
11	GLY	ASP	ILE	SER	ASP	ILE	VAL	ASP	THR	ASP
12	SER	GLY	VAL	HIS	ILE	ILE	LYS	ARG	THR	ALA

1	HIS	MET	ALA	SER	ARG	ASP	GLN	VAL	LYS	ALA
2	SER	HIS	ILE	LEU	ILE	LYS	HIS	GLN	GLY	SER
3	ARG	ARG	LYS	ALA	SER	TRP	LYS	ASP	PRO	GLU
4	GLY	LYS	ILE	ILE	LEU	THR	THR	THR	ARG	GLU
5	ALA	ALA	VAL	GLU	GLN	LEU	LYS	SER	ILE	ARG
6	GLU	ASP	ILE	VAL	SER	GLY	LYS	ALA	ASN	PHE
7	GLU	GLU	VAL	ALA	THR	ARG	VAL	SER	ASP	CYS
8	SER	SER	ALA	LYS	ARG	GLY	GLY	ASP	LEU	GLY
9	SER	PHE	GLY	ARG	GLY	GLN	MET	GLN	LYS	PRO
10	PHE	GLU	GLU	ALA	THR	TYR	ALA	LEU	LYS	VAL
11	GLY	ASP	ILE	SER	ASP	ILE	VAL	ASP	THR	ASP
12	SER	GLY	VAL	HIS	ILE	ILE	LYS	ARG	THR	ALA