BMRB Entry 4669

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PDB ID: 1cwx
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR4669
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Structural Analysis of the Immunodominant Antigenic Region of the Hepatitis C Virus Capsid Protein by NMR

Deposition date:

2000-02-25

Original release date:

2002-04-01

Authors:

Ladaviere, L.; Deleage, G.; Montserret, R.; Dalbon, P.; Jolivet, M.; Penin, F.

Citation:

Citation: Ladaviere, L.; Deleage, G.; Montserret, R.; Dalbon, P.; Jolivet, M.; Penin, F.. "Structural Analysis of the Immunodominant Antigenic Region of the Hepatitis C Virus Capsid Protein by NMR" .

Assembly members:

Assembly members:
HEPATITIS C VIRUS CAPSID PROTEIN, polymer, 44 residues, 4900 Da.

Natural source:

Natural source: Common Name: hepatitis C virus Taxonomy ID: 11103 Superkingdom: viruses Kingdom: not available Genus/species: hepatitis C virus hepatitis C virus

Experimental source:

Experimental source: Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
HEPATITIS C VIRUS CAPSID PROTEIN: STNPKPQRKTKRNTNRRPQD VKFPGGGQIVGGVYLLPRRG PRLG

Data sets:

assigned_chemical_shifts
- HCV40TFE.ASC

Data type	Count
1H chemical shifts	317

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	HCV cap(2,45)	1

Entities:

Entity 1, HCV cap(2,45) 44 residues - 4900 Da.

1

SER

THR

ASN

PRO

LYS

PRO

GLN

ARG

LYS

THR

2

LYS

ARG

ASN

THR

ASN

ARG

PRO

GLN

ASP

3

VAL

LYS

PHE

PRO

GLY

GLN

ILE

VAL

4

GLY

VAL

TYR

LEU

PRO

ARG

GLY

5

PRO

ARG

LEU

GLY

Samples:

sample_1: HEPATITIS C VIRUS CAPSID PROTEIN mM; Trifluoroethanol, [U-2H], 40%; Sodium phosphate 0.01 M; NaCl 0.1 M

sample_cond_1: pH: 5.9; temperature: 293 K; ionic strength: 0.1 M

Experiments:

Name	Sample	Sample state	Sample conditions
2D NOESY	sample_1	not available	sample_cond_1
DQF-COSY	sample_1	not available	sample_cond_1
2D ROESY	sample_1	not available	sample_cond_1
2D TOCSY	sample_1	not available	sample_cond_1

Software:

VNMR v5.1 - DATA COLLECTION, DATA ANALYSIS

X-PLOR v3.1 - REFINEMENT, STRUCTURE SOLUTION

NMR spectrometers:

Varian UnityPlus 500 MHz

BMRB	15767 15768
PDB	1CWX 1XCQ 1XCT 1XF5
DBJ	BAA00452 BAA00705 BAA00706 BAA00792 BAA00968
EMBL	CAA03854 CAA43788 CAA43790 CAA43791 CAA43792
GB	AAA16300 AAA16311 AAA20153 AAA20154 AAA21028
PIR	JQ1926
PRF	2012309A 2116349AA 2116349AB 2116349AC 2116349AD
REF	NP_671491 NP_751919 YP_001469630 YP_001469632 YP_001469633
SP	O39928 O39929 O91936 O92972 P26660
AlphaFold	O39928 O39929 O91936 O92972 P26660