BMRB Entry 4615

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PDB ID: 1dkc
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR4615
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution Structure of PAFP-S: A new Knottin-type Antifungal Peptide from the seeds of Phytolacca americana

Deposition date:

2000-05-05

Original release date:

2002-01-23

Authors:

Gao, G.; Liu, W.; Dai, J.; Wang, J.; Hu, Z.; Zhang, Y.; Wang, D.

Citation:

Citation: Gao, G.; Liu, W.; Dai, J.; Wang, J.; Hu, Z.; Zhang, Y.; Wang, D.. "Solution Structure of PAFP-S: A new Knottin-type Antifungal Peptide from the seeds of Phytolacca americana" Biochemistry 40, 10973-10978 (2001).
PubMed: 11551192

Assembly members:

Assembly members:
antifungal peptide, polymer, 38 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Pokeweed Taxonomy ID: 3527 Superkingdom: Eukaryota Kingdom: Viridiplantae Genus/species: Phytolacca americana

Experimental source:

Experimental source: Production method: purified from natural source

Entity Sequences (FASTA):

Entity Sequences (FASTA):
antifungal peptide: AGCIKNGGRCNASAGPPYCC SSYCFQIAGQSYGVCKNR

Data sets:

assigned_chemical_shifts
- chemical_shift_set_1

Data type	Count
1H chemical shifts	203

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	antifungal peptide	1

Entities:

Entity 1, antifungal peptide 38 residues - Formula weight is not available

1

ALA

GLY

CYS

ILE

LYS

ASN

GLY

ARG

CYS

2

ASN

ALA

SER

ALA

GLY

PRO

TYR

CYS

3

SER

TYR

CYS

PHE

GLN

ILE

ALA

GLY

GLN

4

SER

TYR

GLY

VAL

CYS

LYS

ASN

ARG

Samples:

sample_1: antifungal peptide 4 mM; DSS 0.2 mM

sample_cond_1: pH: 3.5; temperature: 300 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D NOESY	sample_1	not available	sample_cond_1
DQF-COSY	sample_1	not available	sample_cond_1
2D COSY	sample_1	not available	sample_cond_1
2D TOCSY	sample_1	not available	sample_cond_1
E-COSY	sample_1	not available	sample_cond_1

Software:

UXNMR v1.0 - COLLECTION

FELIX v97 - PROCESSING

X-PLOR v3.851 - REFINEMENT

NMR spectrometers:

Bruker DMX 600 MHz

PDB	1DKC
DBJ	BAA88893
GenBank	AAC05129 AAD17942
SWISS-PROT	P81418