BMRB Entry 4614

Name: The G7(syn)-G4(anti) structure of r(GCAGGCGUGC)2
Published: 2000-11-30

Click here to enlarge.

PDB ID: 1f5g
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR4614
MolProbity Validation Chart

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title:

The G7(syn)-G4(anti) structure of r(GCAGGCGUGC)2

Deposition date:

2000-06-12

Original release date:

2000-11-30

Authors:

Burkard, Mark; Turner, Douglas

Citation:

Citation: Burkard, Mark; Turner, Douglas. "The NMR structures of r(GCAGGCGUGC)2 and determinants of stability for single guanosine-guanosine base pairs" Biochemistry 39, 11748-11762 (2000).

Assembly members:

Assembly members:
5'-r(*GP*CP*AP*GP*GP*CP*GP*UP*GP*C)-3', polymer, 10 residues, Formula weight is not available

Natural source:

Natural source: Common Name: not available Taxonomy ID: not available Superkingdom: not available Kingdom: not available Genus/species: not available not available

Experimental source:

Experimental source: Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
5'-r(*GP*CP*AP*GP*GP*CP*GP*UP*GP*C)-3': GCAGGCGUGC

Data sets:

assigned_chemical_shifts
- chemical_shift_set_1

Data type	Count
1H chemical shifts	54

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	GCAGGCGUGC strand 1	1
2	GCAGGCGUGC strand 2	1

Entities:

Entity 1, GCAGGCGUGC strand 1 10 residues - Formula weight is not available

1

G

C

A

G

C

G

U

G

C

Samples:

D2O_sample: 5'-r(*GP*CP*AP*GP*GP*CP*GP*UP*GP*C)-3' 3.0 mM; NaCl 80 mM; phosphate 10 mM; D2O 100%

H2O_sample: 5'-r(*GP*CP*AP*GP*GP*CP*GP*UP*GP*C)-3' 1.0 mM; NaCl 80 mM; Na_phosphate 10 mM; H2O 90%; D2O 10%

sample_cond_1: ionic strength: 90 mEq; pH: 7; temperature: 310.15 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D NOESY	not available	not available	sample_cond_1
DQF-COSY	not available	not available	sample_cond_1

Software:

VNMR v5.2 - data collection

FELIX v95.0 - data analysis

DISCOVER v95.0 - structure solution

NMR spectrometers:

Varian INOVA 500 MHz