BMRB Entry 4612
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR4612
MolProbity Validation Chart
NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
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RDF gzip file.
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Citation: Patel, P.; Bhavesh, N.; Hosur, R.. "NMR Observation of a Novel C-Tetrad in the Structure of the SV40 Repeat Sequence
GGGCGG" Biochem. Biophys. Res. Commun. 270, 967-971 (2000).
Assembly members:
TGGGCGGT, polymer, 8 residues, Formula weight is not available
Natural source: Common Name: SV 40 virus Taxonomy ID: 10633 Superkingdom: Viruses Kingdom: not available Genus/species: Polyomavirus not available
Experimental source: Production method: chemical synthesis
Entity Sequences (FASTA):
TGGGCGGT: TGGGCGGT
- assigned_chemical_shifts
| Data type | Count |
| 1H chemical shifts | 62 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | 5'-D(*TP*GP*GP*GP*CP*GP*GP*T)-3', strand 1a | 1 |
| 2 | 5'-D(*TP*GP*GP*GP*CP*GP*GP*T)-3', strand 1b | 1 |
| 3 | 5'-D(*TP*GP*GP*GP*CP*GP*GP*T)-3', strand 2a | 1 |
| 4 | 5'-D(*TP*GP*GP*GP*CP*GP*GP*T)-3', strand 2b | 1 |
Entities:
Entity 1, 5'-D(*TP*GP*GP*GP*CP*GP*GP*T)-3', strand 1a 8 residues - Formula weight is not available
| 1 | DT | DG | DG | DG | DC | DG | DG | DT |
Samples:
sample_1: TGGGCGGT mM; sodium phosphate 10 mM; EDTA 0.2 mM; NaCl 200 mM; H2O 90%; D2O 10%
sample_2: TGGGCGGT1 – 2 mM; sodium phosphate 10 mM; EDTA 0.2 mM; NaCl 200 mM; D2O 100%
sample_cond_1: pH: 7.0; pressure: 1 atm; temperature: .
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D NOESY | not available | not available | sample_cond_1 |
| 2D TOCSY | not available | not available | sample_cond_1 |
| DQF-COSY | not available | not available | sample_cond_1 |
Software:
VNMR v6.1 - data collection, data processing
FELIX v230 and 97 - data processing
DISCOVER v3.1 - structure solution
IRMA v2.3 - refinement
NMR spectrometers:
- Varian UNITYplus 600 MHz