BMRB Entry 4609

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PDB ID: 1emq
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR4609
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

NMR observation of T-tetrads in a parallel stranded DNA quadruplex formed by Saccharomyces cerevisiae telomere sequence

Deposition date:

2000-05-05

Original release date:

2001-01-04

Authors:

Hosur, R.; Patel, P.

Citation:

Citation: Hosur, R.; Patel, P.. "NMR observation of T-tetrads in a parallel stranded DNA quadruplex formed by Saccharomyces cerevisiae telomere sequence" Nucleic Acids Res. 27, 2457-2464 (1999).

Assembly members:

Assembly members:
yeast telomere repeats, polymer, 7 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Yeast Taxonomy ID: 4932 Superkingdom: Eukaryota Kingdom: Fungi Genus/species: Saccharomyces cerevisiae

Experimental source:

Experimental source: Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
yeast telomere repeats: TGGTGGC

Data sets:

assigned_chemical_shifts
- chemical_shift_set_1

Data type	Count
1H chemical shifts	59

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	yeast telomere repeats, strand 1a	1
2	yeast telomere repeats, strand 1b	1
3	yeast telomere repeats, strand 2a	1
4	yeast telomere repeats, strand 2b	1

Entities:

Entity 1, yeast telomere repeats, strand 1a 7 residues - Formula weight is not available

1

DT

DG

DT

DG

DC

Samples:

sample_1: yeast telomere repeats1 – 2 mM; potassium phosphate 10 mM; EDTA 0.2 mM; KCl 100 mM; H2O 90%; D2O 10%

sample_2: yeast telomere repeats1 – 2 mM; potassium phosphate 10 mM; EDTA 0.2 mM; KCl 100 mM; D2O 100%

sample_cond_1: pH: 7.0; pressure: 1 atm; temperature: 293 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D NOESY	not available	not available	sample_cond_1
E COSY	not available	not available	sample_cond_1
2D TOCSY	not available	not available	sample_cond_1

Software:

FELIX v230 - data processing

VNMR v6.1 - data collection

DISCOVER v3.1 - structure solution

IRMA v2.3 - refinement

NMR spectrometers:

Bruker AMX 500 MHz