BMRB Entry 4478

Name: PKD domain 1 from Human polycystein-1
Published: 2000-05-25

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PDB ID: 1b4r
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR4478
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

PKD domain 1 from Human polycystein-1

Deposition date:

1998-12-30

Original release date:

2000-05-25

Authors:

Bycroft, M.

Citation:

Citation: Bycroft, M.; Bateman, A.; Clarke, J.; Hamill, S.; Sandford, R.; Thomas, R.; Chothia, C.. "The Structure of a PKD Domain from Polycystin-1: Implications for Polycystic Kidney Diseas" EMBO J. 18, 297-305 (1999).

Assembly members:

Assembly members:
PKD1 HUMAN, polymer, 91 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli

Entity Sequences (FASTA):

Entity Sequences (FASTA):
PKD1 HUMAN: GSVFPASPGATLVGPHGPLA SGQLAAFHIAAPLPVTATRW DFGDGSAEVDAAGPAASHRY VLPGRYHVTAVLALGAGSAL LGTDVQVEAAP

Data sets:

assigned_chemical_shifts
- chem_shift_set_1

Data type	Count
1H chemical shifts	520
13C chemical shifts	176
15N chemical shifts	80

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	PKD1 HUMAN	1

Entities:

Entity 1, PKD1 HUMAN 91 residues - Formula weight is not available

1

GLY

SER

VAL

PHE

PRO

ALA

SER

PRO

GLY

ALA

2

THR

LEU

VAL

GLY

PRO

HIS

GLY

PRO

LEU

ALA

3

SER

GLY

GLN

LEU

ALA

PHE

HIS

ILE

ALA

4

ALA

PRO

LEU

PRO

VAL

THR

ALA

THR

ARG

TRP

5

ASP

PHE

GLY

ASP

GLY

SER

ALA

GLU

VAL

ASP

6

ALA

GLY

PRO

ALA

SER

HIS

ARG

TYR

7

VAL

LEU

PRO

GLY

ARG

TYR

HIS

VAL

THR

ALA

8

VAL

LEU

ALA

LEU

GLY

ALA

GLY

SER

ALA

LEU

9

LEU

GLY

THR

ASP

VAL

GLN

VAL

GLU

ALA

10

PRO

Samples:

sample_1: PKD1 HUMAN, [U-13C; U-15N], 1 – 3 mM; acetate buffer, [U-2H], mM

sample_cond_1: pH: 3.0; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions

Software:

No software information available

NMR spectrometers:

Bruker AMX 500 MHz

PDB	1B4R
GB	AAB59488
REF	XP_003804194 XP_009439072 XP_011521097