BMRB Entry 4451

Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR4451

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Structure of the CAD Domain of Caspase-activated DNase and Interaction with the CAD Domain of its Inhibitor

Deposition date:

1999-11-04

Original release date:

2000-12-15

Authors:

Uegaki, Koichi; Otomo, Takanori; Sakahira, Hideki; Shimizu, Masato; Yumoto, Noboru; Kyogoku, Yoshimasa; Nagata, Shigekazu; Yamazaki, Toshio

Citation:

Citation: Uegaki, Koichi; Otomo, Takanori; Sakahira, Hideki; Shimizu, Masato; Yumoto, Noboru; Kyogoku, Yoshimasa; Nagata, Shigekazu; Yamazaki, Toshio. "Structure of the CAD Domain of Caspase-activated DNase and Interaction with the CAD Domain of its Inhibitor" J. Mol. Biol. 297, 1121-1128 (2000).

Assembly members:

Assembly members:
N-terminal domain of caspase activated DNase, polymer, 87 residues, Formula weight is not available

Natural source:

Natural source: Common Name: mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli

Entity Sequences (FASTA):

Entity Sequences (FASTA):
N-terminal domain of caspase activated DNase: MCAVLRQPKCVKLRALHSAC KFGVAARSCQELLRKGCVRF QLPMPGSRLCLYEDGTEVTD DCFPGLPNDAELLLLTAGET WHGYVSD

Data sets:

assigned_chemical_shifts
- shift_set_1

Data type	Count
1H chemical shifts	611
13C chemical shifts	379
15N chemical shifts	93

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	CAD domain	1

Entities:

Entity 1, CAD domain 87 residues - Formula weight is not available

1

MET

CYS

ALA

VAL

LEU

ARG

GLN

PRO

LYS

CYS

2

VAL

LYS

LEU

ARG

ALA

LEU

HIS

SER

ALA

CYS

3

LYS

PHE

GLY

VAL

ALA

ARG

SER

CYS

GLN

4

GLU

LEU

ARG

LYS

GLY

CYS

VAL

ARG

PHE

5

GLN

LEU

PRO

MET

PRO

GLY

SER

ARG

LEU

CYS

6

LEU

TYR

GLU

ASP

GLY

THR

GLU

VAL

THR

ASP

7

ASP

CYS

PHE

PRO

GLY

LEU

PRO

ASN

ASP

ALA

8

GLU

LEU

THR

ALA

GLY

GLU

THR

9

TRP

HIS

GLY

TYR

VAL

SER

ASP

Samples:

sample_1: N-terminal domain of caspase activated DNase, [U-15N; U-13C], 1.0 mM

Sample_conditions_set_1: pH: 5.6; temperature: 298 K; ionic strength: 0.05 M

Experiments:

Name	Sample	Sample state	Sample conditions
1H-15N NOESY	not available	not available	not available
1H-15N TOCSY	not available	not available	not available
1H-15N HSQC	not available	not available	not available
HNCACB	not available	not available	not available
CBCA(CO)NH	not available	not available	not available
HCCH-TOCSY	not available	not available	not available
1H-13C NOESY	not available	not available	not available
C(CO)NH	not available	not available	not available
HNCO	not available	not available	not available

Software:

NMRPipe -

PIPP -

PROCHEK-NMR -

NMR spectrometers:

Bruker DMX 500 MHz

PDB	1C9F 1F2R 1V0D
DBJ	BAA24977 BAC36905
GB	AAH53052 EDL14950
REF	NP_031885 XP_006538580 XP_011248488
SP	O54788
AlphaFold	O54788