BMRB Entry 4435
Chem Shift validation: AVS_anomalous, AVS_full
BMRB Entry DOI: doi:10.13018/BMR4435
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Citation: Brennan, L.; Turner, D.; Messias, A.; Teodoro, M.; Legall, J.; Santos, H.; Xavier, A.. "Structural Basis for the Network of Functional Cooperativities in Cytochrome
c(3) from Desulfovibrio gigas: Solution Structures of the Oxidised and Reduced
states" J. Mol. Biol. 298, 61-82 (2000).
Assembly members:
CYTOCHROME C3, polymer, 112 residues, 14000 Da.
HEC, non-polymer, 618.503 Da.
Natural source: Common Name: not available Taxonomy ID: 879 Superkingdom: Eubacteria Kingdom: not available Genus/species: Desulfovibrio gigas
Experimental source: Production method: purified from the natural source
Entity Sequences (FASTA):
CYTOCHROME C3: VDVPADGAKIDFIAGGEKNL
TVVFNHSTHKDVKCDDCHHQ
PGDKQYAGCTTDGCHNILDK
ADKSVNSWYKVVHDAKGGAK
PTCISCHKDKAGDDKELKKK
LTGCKGSACHPS
| Data type | Count |
| 1H chemical shifts | 777 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | cytochrome c3 | 1 |
| 2 | heme I | 2 |
| 3 | heme II | 2 |
| 4 | heme III | 2 |
| 5 | heme IV | 2 |
Entities:
Entity 1, cytochrome c3 112 residues - 14000 Da.
| 1 | VAL | ASP | VAL | PRO | ALA | ASP | GLY | ALA | LYS | ILE | ||||
| 2 | ASP | PHE | ILE | ALA | GLY | GLY | GLU | LYS | ASN | LEU | ||||
| 3 | THR | VAL | VAL | PHE | ASN | HIS | SER | THR | HIS | LYS | ||||
| 4 | ASP | VAL | LYS | CYS | ASP | ASP | CYS | HIS | HIS | GLN | ||||
| 5 | PRO | GLY | ASP | LYS | GLN | TYR | ALA | GLY | CYS | THR | ||||
| 6 | THR | ASP | GLY | CYS | HIS | ASN | ILE | LEU | ASP | LYS | ||||
| 7 | ALA | ASP | LYS | SER | VAL | ASN | SER | TRP | TYR | LYS | ||||
| 8 | VAL | VAL | HIS | ASP | ALA | LYS | GLY | GLY | ALA | LYS | ||||
| 9 | PRO | THR | CYS | ILE | SER | CYS | HIS | LYS | ASP | LYS | ||||
| 10 | ALA | GLY | ASP | ASP | LYS | GLU | LEU | LYS | LYS | LYS | ||||
| 11 | LEU | THR | GLY | CYS | LYS | GLY | SER | ALA | CYS | HIS | ||||
| 12 | PRO | SER |
Entity 2, heme I - C34 H34 Fe N4 O4 - 618.503 Da.
| 1 | HEC |
Samples:
sample_one: CYTOCHROME C3 2 mM; ampicillin 70 uM; kanamicine 50 uM; chloramphenicol 50 uM
sample_conditions: pH: 5.1 na; temperature: 306.4 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D-1H-NOESY | sample_one | not available | sample_conditions |
| 2D-1H-TOCSY | sample_one | not available | sample_conditions |
| 2D-1H-COSY | sample_one | not available | sample_conditions |
Software:
XEASY -
NMR spectrometers:
- Bruker DRX 500 MHz