BMRB Entry 4380

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR4380

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

1H, 15N and 13C Resonance Assignments and Monomeric Structure of the Amino-Terminal Extracellular Domain of Epithelial Cadherin

Deposition date:

1999-06-30

Original release date:

2007-07-13

Authors:

Overduin, Michael; Tong, Kit; Kay, Cyril; Ikura, Mitsuhiko

Citation:

Citation: Overduin, Michael; Tong, Kit; Kay, Cyril; Ikura, Mitsuhiko. "1H, 15N and 13C Resonance Assignments and Monomeric Structure of the Amino-Terminal Extracellular Domain of Epithelial Cadheri" J. Biomol. NMR 7, 173-189 (1996).

Assembly members:

Assembly members:
Epithelial cadherin, polymer, 146 residues, Formula weight is not available
CALCIUM ION, non-polymer, 40.078 Da.

Natural source:

Natural source: Common Name: house mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus Musculus

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Epithelial cadherin: MRDWVIPPISCPENEKGEFP KNLVQIKSNRDKETKVFYSI TGQGADKPPVGVFIIERETG WLKVTQPLDREAIAKYILYS HAVSSNGEAVEDPMEIVITV TDQNDNRPEFTQEVFEGSVA EGAVPGTSVMKVSATDADDD VNTYNA

Data sets:

assigned_chemical_shifts
- chemical_shift_set_1

Data type	Count
13C chemical shifts	444
15N chemical shifts	133
1H chemical shifts	792

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	E-cadherin domain 1	1

Entities:

Entity 1, E-cadherin domain 1 146 residues - Formula weight is not available

1

MET

ARG

ASP

TRP

VAL

ILE

PRO

ILE

SER

2

CYS

PRO

GLU

ASN

GLU

LYS

GLY

GLU

PHE

PRO

3

LYS

ASN

LEU

VAL

GLN

ILE

LYS

SER

ASN

ARG

4

ASP

LYS

GLU

THR

LYS

VAL

PHE

TYR

SER

ILE

5

THR

GLY

GLN

GLY

ALA

ASP

LYS

PRO

VAL

6

GLY

VAL

PHE

ILE

GLU

ARG

GLU

THR

GLY

7

TRP

LEU

LYS

VAL

THR

GLN

PRO

LEU

ASP

ARG

8

GLU

ALA

ILE

ALA

LYS

TYR

ILE

LEU

TYR

SER

9

HIS

ALA

VAL

SER

ASN

GLY

GLU

ALA

VAL

10

GLU

ASP

PRO

MET

GLU

ILE

VAL

ILE

THR

VAL

11

THR

ASP

GLN

ASN

ASP

ASN

ARG

PRO

GLU

PHE

12

THR

GLN

GLU

VAL

PHE

GLU

GLY

SER

VAL

ALA

13

GLU

GLY

ALA

VAL

PRO

GLY

THR

SER

VAL

MET

14

LYS

VAL

SER

ALA

THR

ASP

ALA

ASP

15

VAL

ASN

THR

TYR

ASN

ALA

Samples:

sample_1: Epithelial cadherin, [U-13C; U-15N], 0.1 – 2 mM; KCl 100 mM; perdeuterated dithiothreitol 10 mM; perdeuterated Tris 20 mM; sodium azide 50 uM; CaCl2 10 mM

condition_1: pH*: 7.2; temperature: 296 K

Experiments:

Name	Sample	Sample state	Sample conditions
not available	sample_1	not available	condition_1

Software:

PIPP - spectral analysis

NMR spectrometers:

Varian UNITY-plus 500 MHz