BMRB Entry 4359

Chem Shift validation: AVS_anomalous, AVS_full
BMRB Entry DOI: doi:10.13018/BMR4359

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

NMR studies of the Pbx1 TALE Homeodomain Protein free in Solution and bound to DNA : Proposal for a Mechanism of HoxB1-Pbx1-DNA Complex Assembly

Deposition date:

1999-06-14

Original release date:

1999-11-30

Authors:

Jabet, Carole; Gitti, Rossitza; Summers, Michael; Wolberger, Cynthia

Citation:

Citation: Jabet, Carole; Gitti, Rossitza; Summers, Michael; Wolberger, Cynthia. "NMR studies of the Pbx1 TALE Homeodomain Protein free in Solution and bound to DNA : Proposal for a Mechanism of HoxB1-Pbx1-DNA Complex Assembly" J. Mol. Biol. 291, 521-530 (1999).

Assembly members:

Assembly members:
Pbx1, polymer, 19 residues, Formula weight is not available
Pbx1, polymer, 19 residues, Formula weight is not available
Pbx1, polymer, 87 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Pbx1: CTCTATGATTGATCGGCTG
Pbx1: CAGCCGATCAATCATAGAG
Pbx1: ARRKRRNFNKQATEILNEYF YSHLSNPYPSEEAKEELAKK CGITVSQVSNWFGNKRIRYK KNIGKFQEEANIYAAKTAVT ATNVSAH

Data sets:

assigned_chemical_shifts
- assign_chemical_shifts_1

Data type	Count
1H chemical shifts	74
13C chemical shifts	71
15N chemical shifts	74

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Pbx1 HD complex dna 1	1
2	Pbx1 HD complex dna 2	2
3	Pbx1 HD complex protein	3

Entities:

Entity 1, Pbx1 HD complex dna 1 19 residues - Formula weight is not available

1

DC

DT

DC

DT

DA

DT

DG

DA

DT

2

DG

DA

DT

DC

DG

DC

DT

DG

Entity 2, Pbx1 HD complex dna 2 19 residues - Formula weight is not available

1

DC

DA

DG

DC

DG

DA

DT

DC

DA

2

DA

DT

DC

DA

DT

DA

DG

DA

DG

Entity 3, Pbx1 HD complex protein 87 residues - Formula weight is not available

1

ALA

ARG

LYS

ARG

ASN

PHE

ASN

LYS

2

GLN

ALA

THR

GLU

ILE

LEU

ASN

GLU

TYR

PHE

3

TYR

SER

HIS

LEU

SER

ASN

PRO

TYR

PRO

SER

4

GLU

ALA

LYS

GLU

LEU

ALA

LYS

5

CYS

GLY

ILE

THR

VAL

SER

GLN

VAL

SER

ASN

6

TRP

PHE

GLY

ASN

LYS

ARG

ILE

ARG

TYR

LYS

7

LYS

ASN

ILE

GLY

LYS

PHE

GLN

GLU

ALA

8

ASN

ILE

TYR

ALA

LYS

THR

ALA

VAL

THR

9

ALA

THR

ASN

VAL

SER

ALA

HIS

Samples:

sample_1: Pbx1 homeodomain, [U-90% 15N], 1 mM

sample_2: Pbx1 homeodomain, [U-95% 13C; U-90% 15N], 1 mM

sample_conditions_1: pH: 7 na; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
1H-15N NOESY	not available	not available	not available
1H-15N TOCSY	not available	not available	not available
HNCA	not available	not available	not available
HN(CO)CA	not available	not available	not available

Software:

NMRPipe - data processing

NMRView - peak assignments

NMR spectrometers:

Bruker DRX 800 MHz
Bruker DMX 600 MHz

BMRB	4357 4358
PDB	1B72 1LFU 1PUF
DBJ	BAA96135 BAA96136 BAB83538 BAF84104 BAG10741
GB	AAA21832 AAA36484 AAA36764 AAA60031 AAB71191
PIR	B33061
REF	NP_001094151 NP_001128334 NP_001179697 NP_001191890 NP_001191892
SP	P40424 P41778
TPG	DAA32038
AlphaFold	P40424 P41778