BMRB Entry 4283

Name: NMR Structure of the Angiogenesis Marker Oncofoetal Fibronectin ED-B Domain
Published: 1999-10-01

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR4283

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

NMR Structure of the Angiogenesis Marker Oncofoetal Fibronectin ED-B Domain

Deposition date:

1998-12-14

Original release date:

1999-10-01

Authors:

Fattorusso, Roberto; Pellecchia, Maurizio; Viti, Francesca; Neri, Paolo; Neri, Dario; Wuthrich, Kurt

Citation:

Citation: Fattorusso, Roberto; Pellecchia, Maurizio; Viti, Francesca; Neri, Paolo; Neri, Dario; Wuthrich, Kurt. "NMR Structure of the Angiogenesis Marker Oncofoetal Fibronectin ED-B Domain" Structure 7, 381-390 (1999).

Assembly members:

Assembly members:
fibronectin extra domain B, polymer, 95 residues, 10000 Da.

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
fibronectin extra domain B: MRGSEVPQLTDLSFVDITDS SIGLRWTPLNSSTIIGYRIT VVAAGEGIPIFEDFVDSSVG YYTVTGLEPGIDYDISVITL INGGESAPTTLTQQT

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts

Data type	Count
1H chemical shifts	657
15N chemical shifts	97

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	EDB	1

Entities:

Entity 1, EDB 95 residues - 10000 Da.

1

MET

ARG

GLY

SER

GLU

VAL

PRO

GLN

LEU

THR

2

ASP

LEU

SER

PHE

VAL

ASP

ILE

THR

ASP

SER

3

SER

ILE

GLY

LEU

ARG

TRP

THR

PRO

LEU

ASN

4

SER

THR

ILE

GLY

TYR

ARG

ILE

THR

5

VAL

ALA

GLY

GLU

GLY

ILE

PRO

ILE

6

PHE

GLU

ASP

PHE

VAL

ASP

SER

VAL

GLY

7

TYR

THR

VAL

THR

GLY

LEU

GLU

PRO

GLY

8

ILE

ASP

TYR

ASP

ILE

SER

VAL

ILE

THR

LEU

9

ILE

ASN

GLY

GLU

SER

ALA

PRO

THR

10

LEU

THR

GLN

THR

Samples:

sample_one: fibronectin extra domain B 1.3 mM; NaCl 40 mM; phosphate_buffer 20 mM; H2O 90%; D2O 10%

sample_two: fibronectin extra domain B 1.3 mM; NaCl 40 mM; phosphate_buffer 20 mM; D2O 100%

sample_conditions_one: pH: 7.5

Experiments:

Name	Sample	Sample state	Sample conditions

Software:

No software information available

NMR spectrometers:

Bruker DRX 500 MHz
Bruker DRX 600 MHz
Bruker DRX 750 MHz

BMRB	19906
PDB	2FNB 2MNU 4GH7
EMBL	CAB52437
GB	AAA52461 AAA67749