BMRB Entry 4276

Click here to enlarge.

PDB ID: 1b2i
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR4276
MolProbity Validation Chart

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title:

Solution Structure and Dynamics of the Plasminogen Kringle 2-AMCHA Complex: 3/1-Helix in Homologous Domains

Deposition date:

1998-11-27

Original release date:

2000-06-17

Authors:

Marti, D.; Schaller, J.; Llinas, M.

Citation:

Citation: Marti, D.; Schaller, J.; Llinas, M.. "Solution structure and dynamics of the plasminogen kringle 2-AMCHA complex: 3(1)-helix in homologous domains" Biochemistry 38, 15741-15755 (1999).
PubMed: 10625440

Assembly members:

Assembly members:
Plasminogen, polymer, 83 residues, 9631 Da.
AMH, non-polymer, 157.210 Da.

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: coli Vector: pQE-8

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Plasminogen: TSEECMHGSGENYDGKISKT MSGLECQAWDSQSPHAHGYI PSKFPNKNLKKNYCRNPDRE LRPWCFTTDPNKRWELCDIP RCT

Data sets:

assigned_chemical_shifts
- chem_shift_set_1
coupling_constants
- coupling_constants_label

Data type	Count
13C chemical shifts	81
15N chemical shifts	89
1H chemical shifts	558
coupling constants	67

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Pgn	1
2	TRANS-4-AMINOMETHYLCYCLOHEXANE-1-CARBOXYLIC ACID	2

Entities:

Entity 1, Pgn 83 residues - 9631 Da.

1

THR

SER

GLU

CYS

MET

HIS

GLY

SER

GLY

2

GLU

ASN

TYR

ASP

GLY

LYS

ILE

SER

LYS

THR

3

MET

SER

GLY

LEU

GLU

CYS

GLN

ALA

TRP

ASP

4

SER

GLN

SER

PRO

HIS

ALA

HIS

GLY

TYR

ILE

5

PRO

SER

LYS

PHE

PRO

ASN

LYS

ASN

LEU

LYS

6

LYS

ASN

TYR

CYS

ARG

ASN

PRO

ASP

ARG

GLU

7

LEU

ARG

PRO

TRP

CYS

PHE

THR

ASP

PRO

8

ASN

LYS

ARG

TRP

GLU

LEU

CYS

ASP

ILE

PRO

9

ARG

CYS

THR

Entity 2, TRANS-4-AMINOMETHYLCYCLOHEXANE-1-CARBOXYLIC ACID - C8 H15 N O2 - 157.210 Da.

1

AMH

Samples:

sample_1: Plasminogen 2.7 mM; TRANS-4-AMINOMETHYLCYCLOHEXANE-1-CARBOXYLIC ACID 8.1 mM

sample_2: Plasminogen, [U-15N], 2.7 mM; TRANS-4-AMINOMETHYLCYCLOHEXANE-1-CARBOXYLIC ACID 8.1 mM

sample_3: Plasminogen, [U-15N; U-13C], 1.2 mM; TRANS-4-AMINOMETHYLCYCLOHEXANE-1-CARBOXYLIC ACID 3.6 mM

sample_cond_1: pH: 5.1; temperature: 310 K

Experiments:

Name	Sample	Sample state	Sample conditions
COSY	not available	not available	sample_cond_1
NOESY	not available	not available	sample_cond_1
TOCSY	not available	not available	sample_cond_1
3D-NOESY HSQC	not available	not available	sample_cond_1
3D-TOCSY HSQC	not available	not available	sample_cond_1
HNCA	not available	not available	sample_cond_1
HN(CO)CA	not available	not available	sample_cond_1
HCC(CO)NH	not available	not available	sample_cond_1
3D HNHA	not available	not available	sample_cond_1

Software:

FELIX v95.0 -

NMR spectrometers:

Bruker DRX 500 MHz
Bruker DRX 600 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks