BMRB Entry 4252

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR4252

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Triple Resonance Assignment for Abl SH(32) and One in the Complex with a Consolidated Ligand

Deposition date:

1998-10-19

Original release date:

2007-07-13

Authors:

Xu, Rong; Cahill, Sean; Cowburn, David

Citation:

Citation: Xu, Rong; Cahill, Sean; Cowburn, David. "Triple resonance-based assignment for Abl SH(32) and its complex with a consolidated ligand" J. Biomol. NMR 14, 187-188 (1999).

Assembly members:

Assembly members:
Src homology domain 3 and 2, polymer, 166 residues, Formula weight is not available
Abl SH3 binding peptide, polymer, 10 residues, Formula weight is not available
Abl SH2 binding peptide, polymer, 6 residues, Formula weight is not available
G6-Kamide linker, polymer, 6 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Src homology domain 3 and 2: GSPGGSLFVALYDFVASGDN TLSITKGEKLRVLGYNHNGE WAEAQTKNGQGWVPSNYITP VNSLEKHSWYHGPVSRNAAE YLLSSGINGSFLVRESESSP GQRSISLRYEGRVYHYRINT ASDGKLYVSSESRFNTLAEL VHHHSTVADGLITTLHYPAP KRGIRD
Abl SH3 binding peptide: PPAYAPPPVP
Abl SH2 binding peptide: PVYENV
G6-Kamide linker: GGGGGG

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts

Data type	Count
13C chemical shifts	407
15N chemical shifts	151
1H chemical shifts	882

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Abl SH(32)	1
2	consolidated ligand fragment 1	2
3	consolidated ligand fragment 2	3
4	G6-Kamide linker	4

Entities:

Entity 1, Abl SH(32) 166 residues - Formula weight is not available

1

GLY

SER

PRO

GLY

SER

LEU

PHE

VAL

ALA

2

LEU

TYR

ASP

PHE

VAL

ALA

SER

GLY

ASP

ASN

3

THR

LEU

SER

ILE

THR

LYS

GLY

GLU

LYS

LEU

4

ARG

VAL

LEU

GLY

TYR

ASN

HIS

ASN

GLY

GLU

5

TRP

ALA

GLU

ALA

GLN

THR

LYS

ASN

GLY

GLN

6

GLY

TRP

VAL

PRO

SER

ASN

TYR

ILE

THR

PRO

7

VAL

ASN

SER

LEU

GLU

LYS

HIS

SER

TRP

TYR

8

HIS

GLY

PRO

VAL

SER

ARG

ASN

ALA

GLU

9

TYR

LEU

SER

GLY

ILE

ASN

GLY

SER

10

PHE

LEU

VAL

ARG

GLU

SER

GLU

SER

PRO

11

GLY

GLN

ARG

SER

ILE

SER

LEU

ARG

TYR

GLU

12

GLY

ARG

VAL

TYR

HIS

TYR

ARG

ILE

ASN

THR

13

ALA

SER

ASP

GLY

LYS

LEU

TYR

VAL

SER

14

GLU

SER

ARG

PHE

ASN

THR

LEU

ALA

GLU

LEU

15

VAL

HIS

SER

THR

VAL

ALA

ASP

GLY

16

LEU

ILE

THR

LEU

HIS

TYR

PRO

ALA

PRO

17

LYS

ARG

GLY

ILE

ARG

ASP

Entity 2, consolidated ligand fragment 1 10 residues - Formula weight is not available

1

PRO

ALA

TYR

ALA

PRO

VAL

PRO

Entity 3, consolidated ligand fragment 2 6 residues - Formula weight is not available

1

PRO

VAL

TYR

GLU

ASN

VAL

Entity 4, G6-Kamide linker 6 residues - Formula weight is not available

1

GLY

Samples:

sample_one: Src homology domain 3 and 2 0.8 mM

sample_conditions_one: pH: 7.2; temperature: 308 K

Experiments:

Name	Sample	Sample state	Sample conditions

Software:

No software information available

NMR spectrometers:

unknown unknown 0 MHz

BMRB	4251
PDB	1AB2 1OPK 1OPL 2ABL 2FO0 3K2M 3T04 3UYO 4XEY
DBJ	BAC41088 BAD92693 BAG10808
EMBL	CAA10376 CAA10377 CAA24781 CAA34438 CAB56204
GB	AAA35593 AAA35697 AAA43042 AAA51561 AAA51896
REF	NP_001094320 NP_001106174 NP_001193789 NP_001269974 NP_001269975
SP	P00519 P00520 P00521 P10447
TPG	DAA24240
AlphaFold	P00519 P00520 P00521 P10447