BMRB Entry 4211

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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR4211
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Title:
Ragweed pollen allergen from Ambrosia trifida V
Deposition date:
1998-04-25
Original release date:
2007-06-19
Authors:
Warren, G.; Tuner, C.; Petsko, G.; Brunger, A.
Citation:

Citation: Warren, G.; Turner, C.; Petsko, G.; Brunger, A.. "A highly precise solution 1H NMR structure of ragweed allergen Amb. t. V"  J. Mol. Biol. ., .-..

Assembly members:

Assembly members:
giant ragweed allergen 5, polymer, 40 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: giant ragweed   Taxonomy ID: 4214   Superkingdom: Eukaryota   Kingdom: Viridiplantae   Genus/species: Ambrosia trifida

Experimental source:

Experimental source:   Production method: purified from the natural source

Entity Sequences (FASTA):

Entity Sequences (FASTA):
giant ragweed allergen 5: DDGLCYEGTNCGKVGKYCCS PIGKYCVCYDSKAICNKNCT

Data sets:
Data typeCount
1H chemical shifts253
coupling constants32

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1giant ragweed allergen 51

Entities:

Entity 1, giant ragweed allergen 5 40 residues - Formula weight is not available

1   ASPASPGLYLEUCYSTYRGLUGLYTHRASN
2   CYSGLYLYSVALGLYLYSTYRCYSCYSSER
3   PROILEGLYLYSTYRCYSVALCYSTYRASP
4   SERLYSALAILECYSASNLYSASNCYSTHR

Samples:

sample_1: giant ragweed allergen 5 7.8 mM; acetate 50 mM; NaN3 1 mM; EDTA 11 mM; D2O 10%; H2O 90%

sample_2: giant ragweed allergen 5 7.8 mM; acetate 50 mM; NaN3 1 mM; EDTA 11 mM; D2O 99.9%

sample_cond_1: pH: 4.0; temperature: 293 K

Experiments:

NameSampleSample stateSample conditions
not availablenot availablenot availablesample_cond_1

Software:

No software information available

NMR spectrometers:

  • Francis Bitter Magnet Laboratory home built 501.9 MHz
  • Francis Bitter Magnet Laboratory home built 591.1 MHz

Related Database Links:

PDB
EMBL CAA39726
GB AAB02877
SP P10414
AlphaFold P10414