BMRB Entry 4186

Name: NMR Solution Structure of Human Cellular Retinoic Acid Binding Protein-Type II
Published: 2000-03-08

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PDB ID: 1blr
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR4186
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Nicholas Rego and David Koes
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

NMR Solution Structure of Human Cellular Retinoic Acid Binding Protein-Type II

Deposition date:

1998-08-13

Original release date:

2000-03-08

Authors:

Wang, L.; Li, Yue; Abildgaard, Frits; Markley, John; Yan, Honggao

Citation:

Citation: Wang, L.; Li, Yue; Abildgaard, Frits; Markley, John; Yan, Honggao. "NMR Solution Structure of type II Human Cellular Retinoic Acid Binding Protein: Implications for Ligand Binding" Biochemistry 37, 12727-12736 (1998).

Assembly members:

Assembly members:
Cellular Retinoic Acid Binding Protein-Type II, polymer, 137 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eucaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Vector: pET-17b

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Cellular Retinoic Acid Binding Protein-Type II: PNFSGNWKIIRSENFEELLK VLGVNVMLRKIAVAAASKPA VEIKQEGDTFYIKTSTTVRT TEINFKVGEEFEEQTVDGRP CKSLVKWESENKMVCEQKLL KGEGPKTSWTRELTNDGELI LTMTADDVVCTRVYVRE

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_one

Data type	Count
13C chemical shifts	331
15N chemical shifts	118
1H chemical shifts	820

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	CRABPII	1

Entities:

Entity 1, CRABPII 137 residues - Formula weight is not available

1

PRO

ASN

PHE

SER

GLY

ASN

TRP

LYS

ILE

2

ARG

SER

GLU

ASN

PHE

GLU

LEU

LYS

3

VAL

LEU

GLY

VAL

ASN

VAL

MET

LEU

ARG

LYS

4

ILE

ALA

VAL

ALA

SER

LYS

PRO

ALA

5

VAL

GLU

ILE

LYS

GLN

GLU

GLY

ASP

THR

PHE

6

TYR

ILE

LYS

THR

SER

THR

VAL

ARG

THR

7

THR

GLU

ILE

ASN

PHE

LYS

VAL

GLY

GLU

8

PHE

GLU

GLN

THR

VAL

ASP

GLY

ARG

PRO

9

CYS

LYS

SER

LEU

VAL

LYS

TRP

GLU

SER

GLU

10

ASN

LYS

MET

VAL

CYS

GLU

GLN

LYS

LEU

11

LYS

GLY

GLU

GLY

PRO

LYS

THR

SER

TRP

THR

12

ARG

GLU

LEU

THR

ASN

ASP

GLY

GLU

LEU

ILE

13

LEU

THR

MET

THR

ALA

ASP

VAL

CYS

14

THR

ARG

VAL

TYR

VAL

ARG

GLU

Samples:

sample_one: Cellular Retinoic Acid Binding Protein-Type II1.5 – 2.0 mM

sample_conditions_one: pH: 7.3; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
NOESY	sample_one	not available	not available
TOCSY	sample_one	not available	not available
triple resonance experiments	sample_one	not available	not available

Software:

FELIX v95 - Data processing and peak picking

NMR spectrometers:

VARIAN UNITY 500 MHz
BRUKER DMX 500 MHz

PDB	1BLR 1BM5 1CBQ 1CBS 1XCA 2CBS 2FR3 2FRS 2FS6 2FS7 2G78 2G79 2G7B 3CBS 3CR6 3D96 3D97 3F8A 3F9D 3FA7 3FA8 3FA9 3FEL 3FEN 3FEP 3I17 4QGV 4QGW 4QGX
DBJ	BAG34945 BAJ83972
EMBL	CAG29353
GB	AAA52068 AAA58430 AAH01109 AAV38629 AAV38630
REF	NP_001008670 NP_001186652 NP_001253818 NP_001869 XP_001166367
SP	P29373 Q5PXY7
AlphaFold	P29373 Q5PXY7