BMRB Entry 4171

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR4171

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Backbone and C beta Assignments of the Anti-gp120 Antibody Fv Fragment Complexed with an Antigenic Peptide

Deposition date:

1998-08-03

Original release date:

2000-03-02

Authors:

Tugarinov, Vitali; Levy, Rina; Dahan-Shokoroy, Adi; Anglister, Jacob

Citation:

Citation: Tugarinov, Vitali; Levy, Rina; Dahan-Shokoroy, Adi; Anglister, Jacob. "Backbone and C beta Assignments of the Anti-gp120 Antibody Fv Fragment Complexed with an Antigenic Peptide" J. Biomol. NMR 13, 193-194 (1999).

Assembly members:

Assembly members:
light chain, polymer, 112 residues, Formula weight is not available
heavy chain, polymer, 119 residues, Formula weight is not available

Natural source:

Natural source: Common Name: mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pTb11

Entity Sequences (FASTA):

Entity Sequences (FASTA):
light chain: DIVLTQSPASLAVSLGQRAT ISCKASQSVDYDGDSYMNWY QQKPGQPPKLLIYAASNLES GIPARFSGSGSRTDFTLNIH PVEEEDAATYYCQQSNEDPF TFGSGTKLEIKR
heavy chain: QVQLQQSGAELVKPGASVKM SCKAFGYTFTTYPIEWMKQN HGKSLEWIGNFHPYSDDTNY NEKFKGKAKLTVEKSSSTVY LEFSRLTSDDSAVYYCAIHY GSAYAMDYWGQGTSVTVSS

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_one
- assigned_chemical_shifts_two

Data type	Count
13C chemical shifts	431
15N chemical shifts	208
1H chemical shifts	449

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	FvL	1
2	FvH	2

Entities:

Entity 1, FvL 112 residues - Formula weight is not available

1

ASP

ILE

VAL

LEU

THR

GLN

SER

PRO

ALA

SER

2

LEU

ALA

VAL

SER

LEU

GLY

GLN

ARG

ALA

THR

3

ILE

SER

CYS

LYS

ALA

SER

GLN

SER

VAL

ASP

4

TYR

ASP

GLY

ASP

SER

TYR

MET

ASN

TRP

TYR

5

GLN

LYS

PRO

GLY

GLN

PRO

LYS

LEU

6

LEU

ILE

TYR

ALA

SER

ASN

LEU

GLU

SER

7

GLY

ILE

PRO

ALA

ARG

PHE

SER

GLY

SER

GLY

8

SER

ARG

THR

ASP

PHE

THR

LEU

ASN

ILE

HIS

9

PRO

VAL

GLU

ASP

ALA

THR

TYR

10

TYR

CYS

GLN

SER

ASN

GLU

ASP

PRO

PHE

11

THR

PHE

GLY

SER

GLY

THR

LYS

LEU

GLU

ILE

12

LYS

ARG

Entity 2, FvH 119 residues - Formula weight is not available

1

GLN

VAL

GLN

LEU

GLN

SER

GLY

ALA

GLU

2

LEU

VAL

LYS

PRO

GLY

ALA

SER

VAL

LYS

MET

3

SER

CYS

LYS

ALA

PHE

GLY

TYR

THR

PHE

THR

4

THR

TYR

PRO

ILE

GLU

TRP

MET

LYS

GLN

ASN

5

HIS

GLY

LYS

SER

LEU

GLU

TRP

ILE

GLY

ASN

6

PHE

HIS

PRO

TYR

SER

ASP

THR

ASN

TYR

7

ASN

GLU

LYS

PHE

LYS

GLY

LYS

ALA

LYS

LEU

8

THR

VAL

GLU

LYS

SER

THR

VAL

TYR

9

LEU

GLU

PHE

SER

ARG

LEU

THR

SER

ASP

10

SER

ALA

VAL

TYR

CYS

ALA

ILE

HIS

TYR

11

GLY

SER

ALA

TYR

ALA

MET

ASP

TYR

TRP

GLY

12

GLN

GLY

THR

SER

VAL

THR

VAL

SER

Samples:

sample_one: light chain, [U-95% 13C; U-95% 15N], 0.6 mM; heavy chain, [U-95% 13C; U-95% 15N], 0.6 mM

sample_conditions_one: pH: 7.2; temperature: 310 K

Experiments:

Name	Sample	Sample state	Sample conditions

Software:

No software information available

NMR spectrometers:

Bruker DMX 600.13 MHz
Bruker DMX 500.13 MHz

PDB	1IQW 1QNZ
DBJ	BAH95819
EMBL	CAA75909 CAA80931 CAA80933 CAA80935 CAA80937
GB	AAA39088 AAA51113 AAA68538 AAA68560 AAA83114
PIR	S42193
SP	P01665 P01667
AlphaFold	P01665 P01667