BMRB Entry 4150

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR4150

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

The Signal Transducer gp130: Solution Structure of the Carboxy-terminal Domain of the Cytokine Receptor Homology Region

Deposition date:

1998-06-19

Original release date:

2000-04-04

Authors:

Kernebek, T.; Pflanz, S.; Muller-Newen, G.; Kurapkat, G.; Scheek, R.M.; Dijkstra, K.; Heinrich, P.C.; Wollmer, A.; Grzesiek, S.; Grotzinger, Joachim

Citation:

Citation: Kernebek, T.; Pflanz, S.; Muller-Newen, G.; Kurapkat, G.; Scheek, R.M.; Dijkstra, K.; Heinrich, P.C.; Wollmer, A.; Grzesiek, S.; Grotzinger, Joachim. "The Signal Transducer gp130: Solution Structure of the Carboxy-terminal Domain of the Cytokine Receptor Homology Region" Protein Sci. 8, 5-12 (1999).

Assembly members:

Assembly members:
gp130, polymer, 109 residues, 12386 Da.

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapien

Experimental source:

Experimental source: Production method: recombinant technology

Entity Sequences (FASTA):

Entity Sequences (FASTA):
gp130: MDKVKPNPPHNLSVINSEEL SSILKLTWTNPSIKSVIILK YNIQYRTKDASTWSQIPPED TASTRSSFTVQDLKPFTEYV FRIRCMKEDGKGYWSDWSEE ASGITYEDR

Data sets:

assigned_chemical_shifts
- shift_set_1

Data type	Count
13C chemical shifts	392
15N chemical shifts	107
1H chemical shifts	773

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	gp130 domain 3	1

Entities:

Entity 1, gp130 domain 3 109 residues - 12386 Da.

1

MET

ASP

LYS

VAL

LYS

PRO

ASN

PRO

HIS

2

ASN

LEU

SER

VAL

ILE

ASN

SER

GLU

LEU

3

SER

ILE

LEU

LYS

LEU

THR

TRP

THR

ASN

4

PRO

SER

ILE

LYS

SER

VAL

ILE

LEU

LYS

5

TYR

ASN

ILE

GLN

TYR

ARG

THR

LYS

ASP

ALA

6

SER

THR

TRP

SER

GLN

ILE

PRO

GLU

ASP

7

THR

ALA

SER

THR

ARG

SER

PHE

THR

VAL

8

GLN

ASP

LEU

LYS

PRO

PHE

THR

GLU

TYR

VAL

9

PHE

ARG

ILE

ARG

CYS

MET

LYS

GLU

ASP

GLY

10

LYS

GLY

TYR

TRP

SER

ASP

TRP

SER

GLU

11

ALA

SER

GLY

ILE

THR

TYR

GLU

ASP

ARG

Samples:

sample_1: gp130, [U-15N; U-13C], 2.0 mM; phosphate buffer 20 mM; NaCl 200 mM; DTT 0.1 mM

Ex-cond_1: pH*: 7.4; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
CBCA(CO)NH	not available	not available	not available
CBCANH	not available	not available	not available
C(CO)NH	not available	not available	not available
HNCA	not available	not available	not available
HBHA(CO)NH	not available	not available	not available
15N-edited HOHAHA	not available	not available	not available
13C-edited TOCSY	not available	not available	not available
15N-edited NOESY	not available	not available	not available
13C-edited NOESY	not available	not available	not available
HNHA	not available	not available	not available
unknown	sample_1	isotropic	Ex-cond_1

Software:

NMRPipe -

NMRView -

NMR spectrometers:

Varian UNITY 500 MHz
Varian INOVA 600 MHz
Bruker DMX 600 MHz

PDB	1BJ8 1BQU 1I1R 1P9M 1PVH 3L5H
DBJ	BAA78112 BAD89392 BAD89393 BAG10979
GB	AAA59155 AAI17403 AAI17405 ABI18993 ABK41905
REF	NP_001177910 NP_001252920 NP_001254695 NP_002175 NP_786943
SP	P40189
AlphaFold	P40189