BMRB Entry 4120

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PDB ID: 1a60
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR4120
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

NMR Structure of a Classical Pseudoknot: Interplay of Single- and Double-Stranded RNA

Deposition date:

1998-03-05

Original release date:

2001-06-19

Authors:

Kolk, M.; Van der Graaf, M.; Wijmenga, S.; Pleij, C.; Heus, H.; Hilbers, C.

Citation:

Citation: Kolk, M.; Van der Graaf, M.; Wijmenga, S.; Pleij, C.; Heus, H.; Hilbers, C.. "NMR Structure of a Classical Pseudoknot: Interplay of Single- and Double-Stranded RNA" Science 280, 434-438 (1998).
PubMed: 9545221

Assembly members:

Assembly members:
TYMV pseudoknot, polymer, 44 residues, Formula weight is not available

Natural source:

Natural source: Common Name: TYMV Taxonomy ID: 12154 Superkingdom: not available Kingdom: not available Genus/species: Tymovirus Turnip yellow mosaic virus

Experimental source:

Experimental source: Production method: enzymatic synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
TYMV pseudoknot: GGGAGCUCAACUCUCCCCCC CUUUUCCGAGGGUCAUCGGA ACCA

Data sets:

assigned_chemical_shifts
- chem_shift_set_1

Data type	Count
13C chemical shifts	297
1H chemical shifts	339

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	TYMV pseudoknot	1

Entities:

Entity 1, TYMV pseudoknot 44 residues - Formula weight is not available

1

G

A

G

C

U

C

A

2

C

U

C

U

C

3

C

U

C

G

A

G

4

G

U

C

A

U

C

G

A

5

A

C

A

Samples:

sample_1: TYMV pseudoknot1 – 2.5 mM; TYMV pseudoknot, [13C/15N adenine], 1 – 2.5 mM; TYMV pseudoknot, [13C/15N uridine], 1 – 2.5 mM; MgCl2 10 mM

sample_cond_1: ionic strength: 10 mM; pH: 6.7; temperature: 303 K

Experiments:

Name	Sample	Sample state	Sample conditions
(13C-edited/X-filtered)NOESY	not available	not available	not available
TOCSY	not available	not available	not available
(31P spin echo difference)CTHSQC	not available	not available	not available
PCH	not available	not available	not available
HCCH-TOCSY	not available	not available	not available
CT-TOCSY-HSQC	not available	not available	not available
HNCCCH	not available	not available	not available

Software:

No software information available

NMR spectrometers:

BRUKER AM 400 MHz
BRUKER AMX 500 MHz
BRUKER AMX 600 MHz
VARIAN UNITY+ 750 MHz