BMRB Entry 4087

Name: E2 DNA-binding domain from papillomavirus bpv-1
Published: 2000-04-27

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR4087

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

E2 DNA-binding domain from papillomavirus bpv-1

Deposition date:

1999-05-22

Original release date:

2000-04-27

Authors:

Veeraraghavan, S.; Mello, C.; Androphy, E.; Baleja, J.

Citation:

Citation: Veeraraghavan, S.; Mello, C.; Androphy, E.; Baleja, J.. "Structural Correlates for Enhanced Stability in the E2 DNA-Binding Domain from Bovine Papillomavirus" Biochemistry 38, 16115-16124 (1999).

Assembly members:

Assembly members:
E2, polymer, 102 residues, Formula weight is not available

Natural source:

Natural source: Common Name: BPV-1 Taxonomy ID: 10559 Superkingdom: not available Kingdom: not available Genus/species: Bovine papillomavirus

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli

Entity Sequences (FASTA):

Entity Sequences (FASTA):
E2: APRRTTNDGFHLLKAGGSCF ALISGTANQVKCYRFRVKKN HRHRYENCTTTWFTVADNGA ERQGQAQILITFGSPSQRQD FLKHVPLPPGMNISGFTASL DF

Data sets:

assigned_chemical_shifts
- chem_shift_set_1

Data type	Count
13C chemical shifts	336
15N chemical shifts	108
1H chemical shifts	698

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	E2	1

Entities:

Entity 1, E2 102 residues - Formula weight is not available

1

ALA

PRO

ARG

THR

ASN

ASP

GLY

PHE

2

HIS

LEU

LYS

ALA

GLY

SER

CYS

PHE

3

ALA

LEU

ILE

SER

GLY

THR

ALA

ASN

GLN

VAL

4

LYS

CYS

TYR

ARG

PHE

ARG

VAL

LYS

ASN

5

HIS

ARG

HIS

ARG

TYR

GLU

ASN

CYS

THR

6

THR

TRP

PHE

THR

VAL

ALA

ASP

ASN

GLY

ALA

7

GLU

ARG

GLN

GLY

GLN

ALA

GLN

ILE

LEU

ILE

8

THR

PHE

GLY

SER

PRO

SER

GLN

ARG

GLN

ASP

9

PHE

LEU

LYS

HIS

VAL

PRO

LEU

PRO

GLY

10

MET

ASN

ILE

SER

GLY

PHE

THR

ALA

SER

LEU

11

ASP

PHE

Samples:

sample_1: E2, [U-99% 13C], 1.7 mM; Na_posphate 20 mM; Na_chloride 100 mM; dithiothreitol 5 mM; EDTA 0.05 mM; Na_azide 0.01%

sample_2: E2, [U-99% 15N], 1.7 mM; Na_posphate 20 mM; Na_chloride 100 mM; dithiothreitol 5 mM; EDTA 0.05 mM; Na_azide 0.01%

sample_cond_1: pH: 5.75; pressure: 1 atm; temperature: 308.3 K

Experiments:

Name	Sample	Sample state	Sample conditions

Software:

No software information available

NMR spectrometers:

Bruker AMX 500 MHz
Bruker AVANCE 600 MHz

PDB	1DBD 1JJH 2BOP
DBJ	BAL04334
GB	AFV52369 AGM20697 AGM20699 AGM20701 AGM20703
SP	P03122
AlphaFold	P03122