BMRB Entry 36124

Name: Antimicrobial peptide Andersonin-Y1 (AY1)
Published: 2018-07-11

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PDB ID: 5ykk
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR36124
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Antimicrobial peptide Andersonin-Y1 (AY1)

Deposition date:

2017-10-15

Original release date:

2018-07-11

Authors:

Pal, I.; Atreya, H.; Bhunia, A.

Citation:

Citation: Pal, Indrani; Bhattacharyya, Dipita; Kar, Rajiv Kumar; Zarena, D.; Bhunia, Anirban; Atreya, Hanudatta. "A Peptide-Nanoparticle System with Improved Efficacy against Multidrug Resistant Bacteria" Sci. Rep. 9, 4485-4485 (2019).
PubMed: 30872680

Assembly members:

Assembly members:
entity_1, polymer, 18 residues, 2162.727 Da.

Natural source:

Natural source: Common Name: golden crossband frog Taxonomy ID: 369514 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Odorrana andersonii

Experimental source:

Experimental source: Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: FLPKLFAKITKKNMAHIR

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1
spectral_peak_list
- spectral_peak_list_1

Data type	Count
1H chemical shifts	109

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	entity_1	1

Entities:

Entity 1, entity_1 18 residues - 2162.727 Da.

1

PHE

LEU

PRO

LYS

LEU

PHE

ALA

LYS

ILE

THR

2

LYS

ASN

MET

ALA

HIS

ILE

ARG

Samples:

sample_1: PEPTIDE 2 mM; H2O 90%; D2O, [U-2H], 10%

sample_conditions_1: ionic strength: 2 mM; pH: 6; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1

Software:

CYANA, Guntert, Mumenthaler and Wuthrich - structure calculation

XEASY, Bartels et al. - chemical shift assignment, peak picking

NMR spectrometers:

Bruker Avance 800 MHz