BMRB Entry 34647

Name: Solution structures of HIV-1 and SIVmac p6 and their interaction with accessory proteins Vpr and Vpx in the presence of DPC micelles
Published: 2023-01-10

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PDB ID: 7p3p
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR34647
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structures of HIV-1 and SIVmac p6 and their interaction with accessory proteins Vpr and Vpx in the presence of DPC micelles

Deposition date:

2021-07-08

Original release date:

2023-01-10

Authors:

Wang, X.; Bouaziz, S.

Citation:

Citation: Wang, X.; Bouaziz, S.. "Solution structures of HIV-1 and SIVmac p6 and their interaction with accessory proteins Vpr and Vpx in the presence of DPC micelles" .

Assembly members:

Assembly members:
entity_1, polymer, 63 residues, 7242.185 Da.

Natural source:

Natural source: Common Name: SIV Taxonomy ID: 11723 Superkingdom: Viruses Kingdom: not available Genus/species: Lentivirus SIV

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Synthecium

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: PMAQVHQGLMPTAPPEDPAV DLLKNYMQLGKQQREKQRES REKPYKEVTEDLLHLNSLFG GDQ

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1

Data type	Count
13C chemical shifts	23
15N chemical shifts	31
1H chemical shifts	305

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	unit_1	1

Entities:

Entity 1, unit_1 63 residues - 7242.185 Da.

1

PRO

MET

ALA

GLN

VAL

HIS

GLN

GLY

LEU

MET

2

PRO

THR

ALA

PRO

GLU

ASP

PRO

ALA

VAL

3

ASP

LEU

LYS

ASN

TYR

MET

GLN

LEU

GLY

4

LYS

GLN

ARG

GLU

LYS

GLN

ARG

GLU

SER

5

ARG

GLU

LYS

PRO

TYR

LYS

GLU

VAL

THR

GLU

6

ASP

LEU

HIS

LEU

ASN

SER

LEU

PHE

GLY

7

GLY

ASP

GLN

Samples:

sample_1: SIVmac p6 1 mM

sample_conditions_1: ionic strength: 50 mM; pH: 4; pressure: 1 atm; temperature: 323 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1
2D 1H-1H TOCSY	sample_1	isotropic	sample_conditions_1

Software:

TopSpin, Bruker Biospin - processing

ARIA, Linge, O'Donoghue and Nilges - structure calculation

CcpNmr Analysis, CCPN - chemical shift assignment, data analysis

NMR spectrometers:

Bruker AVANCE 600 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks