BMRB Entry 34477

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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR34477
MolProbity Validation Chart

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Title:
Major subunit ComGC from S. sanguinis Com pseudopili
Deposition date:
2020-01-14
Original release date:
2020-04-13
Authors:
Sheppard, D.; Berry, J.; Matthews, S.; Pelicic, V.
Citation:

Citation: Sheppard, D.; Berry, J.; Denise, R.; Rocha, E.; Matthews, S.; Pelicic, V.. "The major subunit of widespread competence pseudopili exhibits a novel and conserved type IV pilin fold"  J. Biol. Chem. 295, 6594-6604 (2020).
PubMed: 32273343

Assembly members:

Assembly members:
entity_1, polymer, 72 residues, 7733.478 Da.

Natural source:

Natural source:   Common Name: Streptococcus sanguinis   Taxonomy ID: 1305   Superkingdom: Bacteria   Kingdom: not available   Genus/species: Streptococcus sanguinis

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli BL21(DE3)   Vector: pET28b

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: NLTKQKDAVSDTGTAAVVKV VESQAELYELKNTNEKASLS KLVSSGNISQKQADSYKAYY GKHSGETQTVAN

Data sets:
Data typeCount
13C chemical shifts285
15N chemical shifts81
1H chemical shifts464

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1entity_11

Entities:

Entity 1, entity_1 72 residues - 7733.478 Da.

1   ASNLEUTHRLYSGLNLYSASPALAVALSER
2   ASPTHRGLYTHRALAALAVALVALLYSVAL
3   VALGLUSERGLNALAGLULEUTYRGLULEU
4   LYSASNTHRASNGLULYSALASERLEUSER
5   LYSLEUVALSERSERGLYASNILESERGLN
6   LYSGLNALAASPSERTYRLYSALATYRTYR
7   GLYLYSHISSERGLYGLUTHRGLNTHRVAL
8   ALAASN

Samples:

sample_1: ComGC, [U-100% 13C; U-100% 15N], 1.0 mM; Na2HPO4/NaH2PO4, natural anundance, 25 mM; NaCl, natural anundance, 50 mM; D2O, natural anundance, 5%

sample_2: ComGC, [U-100% 15N], 0.5 mM; Na2HPO4/NaH2PO4, natural anundance, 25 mM; NaCl, natural anundance, 50 mM; D2O, natural anundance, 5%

sample_3: ComGC, [U-100% 15N], 0.5 mM; Na2HPO4/NaH2PO4, natural anundance, 25 mM; NaCl, natural anundance, 50 mM; D2O, natural anundance, 5%; PEG/hexanol, natural anundance, 3%

sample_conditions_1: ionic strength: 50 mM; pH: 6.0; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
2D 1H-13C HSQC aliphaticsample_1isotropicsample_conditions_1
3D HNCACBsample_1isotropicsample_conditions_1
3D CBCA(CO)NHsample_1isotropicsample_conditions_1
3D HNCOsample_1isotropicsample_conditions_1
3D 15N, 13C NOESYsample_1isotropicsample_conditions_1
2D IPAP HSQCsample_3anisotropicsample_conditions_1
2D IPAP HSQCsample_2isotropicsample_conditions_1
3D HCCH-TOCSYsample_1isotropicsample_conditions_1
3D CCCONHsample_1isotropicsample_conditions_1
3D HCCCONHsample_1isotropicsample_conditions_1
3D HN(CA)COsample_1isotropicsample_conditions_1
3D HBHA(CO)NHsample_1isotropicsample_conditions_1

Software:

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

Sparky, Goddard - chemical shift assignment, peak picking

X-PLOR NIH, Schwieters, Kuszewski, Tjandra and Clore - refinement

NMR spectrometers:

  • Bruker AVANCE III 600 MHz
  • Bruker AVANCE III 800 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks