BMRB Entry 34427

Name: Solution structure of the FUS/TLS RNA recognition motif in complex with U1 snRNA stem loop III
Published: 2020-10-23

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PDB ID: 6snj
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR34427
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the FUS/TLS RNA recognition motif in complex with U1 snRNA stem loop III

Deposition date:

2019-08-26

Original release date:

2020-10-23

Authors:

Campagne, S.; Allain, F.

Citation:

Citation: Jutzi, Daniel; Campagne, Sebastien; Schmidt, Ralf; Reber, Stefan; Mechtersheimer, Jonas; Gypas, Foivos; Schweingruber, Christoph; Colombo, Martino; von Schroetter, Christine; Loughlin, Fionna; Devoy, Anny; Hedlund, Eva; Zavolan, Mihaela; Allain, Frederic H-T; Ruepp, Marc-David. "Aberrant interaction of FUS with the U1 snRNA provides a molecular mechanism of FUS induced amyotrophic lateral sclerosis" Nat. Commun. 11, 6341-6341 (2020).
PubMed: 33311468

Assembly members:

Assembly members:
entity_1, polymer, 131 residues, 14137.444 Da.
entity_2, polymer, 28 residues, 8954.375 Da.

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli BL21(DE3)

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: GGFNKFGGPRDQGSRHDSEQ DNSDNNTIFVQGLGENVTIE SVADYFKQIGIIKTNKKTGQ PMINLYTDRETGKLKGEATV SFDDPPSAKAAIDWFDGKEF SGNPIKVSFATRRADFNRGG GNGRGGRGRGG
entity_2: GGGAUUUCCCCAAAUGUGGG AAACUCCC

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1
spectral_peak_list

Data type	Count
13C chemical shifts	641
15N chemical shifts	139
1H chemical shifts	981

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	entity_1	1
2	entity_2	2

Entities:

Entity 1, entity_1 131 residues - 14137.444 Da.

1

GLY

PHE

ASN

LYS

PHE

GLY

PRO

ARG

2

ASP

GLN

GLY

SER

ARG

HIS

ASP

SER

GLU

GLN

3

ASP

ASN

SER

ASP

ASN

THR

ILE

PHE

VAL

4

GLN

GLY

LEU

GLY

GLU

ASN

VAL

THR

ILE

GLU

5

SER

VAL

ALA

ASP

TYR

PHE

LYS

GLN

ILE

GLY

6

ILE

LYS

THR

ASN

LYS

THR

GLY

GLN

7

PRO

MET

ILE

ASN

LEU

TYR

THR

ASP

ARG

GLU

8

THR

GLY

LYS

LEU

LYS

GLY

GLU

ALA

THR

VAL

9

SER

PHE

ASP

PRO

SER

ALA

LYS

ALA

10

ALA

ILE

ASP

TRP

PHE

ASP

GLY

LYS

GLU

PHE

11

SER

GLY

ASN

PRO

ILE

LYS

VAL

SER

PHE

ALA

12

THR

ARG

ALA

ASP

PHE

ASN

ARG

GLY

13

GLY

ASN

GLY

ARG

GLY

ARG

GLY

ARG

GLY

14

GLY

Entity 2, entity_2 28 residues - 8954.375 Da.

1

G

A

U

C

2

C

A

U

G

U

G

3

A

C

U

C

Samples:

sample_1: FUS/TLS RNA recognition motif (260-390), [U-99% 13C; U-99% 15N], 1.2 mM; SL3 1.5 mM; sodium phosphate 10 mM; sodium chloride 50 mM; DTT 2 mM

sample_2: FUS/TLS RNA recognition motif (260-390), [U-99% 13C; U-99% 15N], 1.2 mM; SL3 1.5 mM; sodium phosphate 10 mM; sodium chloride 50 mM; DTT 2 mM

sample_3: FUS/TLS RNA recognition motif (260-390) 1 mM; SL3, [U-13C; U-15N], 0.8 mM; sodium phosphate 10 mM; sodium chloride 50 mM; DTT 2 mM

sample_4: FUS/TLS RNA recognition motif (260-390) 1 mM; SL3 1 mM; sodium phosphate 10 mM; sodium chloride 50 mM; DTT 2 mM

sample_conditions_1: ionic strength: 60 mM; pH: 6.8; pressure: 1 atm; temperature: 303 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC aliphatic	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC aromatic	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC aliphatic	sample_2	isotropic	sample_conditions_1
2D 1H-13C HSQC aromatic	sample_2	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_3	isotropic	sample_conditions_1
3D 1H-13C NOESY	sample_3	isotropic	sample_conditions_1
2D 1H-13C HSQC aromatic	sample_3	isotropic	sample_conditions_1
2D 1H-13C HSQC aliphatic	sample_3	isotropic	sample_conditions_1
3D 1H-13C NOESY aromatic	sample_2	isotropic	sample_conditions_1
3D 1H-13C NOESY aliphatic	sample_2	isotropic	sample_conditions_1
3D 1H-13C NOESY aromatic	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY aliphatic	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_4	isotropic	sample_conditions_1
3D HNCA	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
2D F1fF2F TOCSY	sample_2	isotropic	sample_conditions_1
2D F2F NOEY	sample_2	isotropic	sample_conditions_1
2D F1FF2f NOESY	sample_2	isotropic	sample_conditions_1
3D 1H-13C filtered edited NOESY HSQC	sample_3	isotropic	sample_conditions_1
3D 1H-13C filtered edited NOESY HSQC	sample_2	isotropic	sample_conditions_1

Software:

Amber v12, Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman - refinement

CYANA v3.98, Guntert, Mumenthaler and Wuthrich - structure calculation

CARA, Keller and Wuthrich - chemical shift assignment

CYANA, Guntert, Mumenthaler and Wuthrich - peak picking

NMR spectrometers:

Bruker AVANCE III 600 MHz
Bruker AVANCE III 700 MHz
Bruker AVANCE 900 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks