BMRB Entry 34014

Name: NMR structure of Chicken AvBD7 defensin
Published: 2016-09-02

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PDB ID: 5lcs
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR34014
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

NMR structure of Chicken AvBD7 defensin

Deposition date:

2016-06-22

Original release date:

2016-09-02

Authors:

Landon, C.; Loth, K.; Meudal, H.

Citation:

Citation: Bailleul, G.; Kravtzoff, A.; Joulin-Giet, A.; Lecaille, F.; Labas, V.; Meudal, H.; Loth, K.; Teixeira-Gomes, A.; Gilbert, F.; Coquet, L.; Jouenne, T.; Bromme, D.; Schouler, C.; Landon, C.; Lalmanach, G.; Lalmanach, A.. "The Unusual Resistance of Avian Defensin AvBD7 to Proteolytic Enzymes Preserves Its Antibacterial Activity." Plos One 11, e0161573-e0161573 (2016).
PubMed: 27561012

Assembly members:

Assembly members:
entity_1, polymer, 47 residues, 5366.268 Da.

Natural source:

Natural source: Common Name: chicken Taxonomy ID: 9031 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Gallus gallus

Experimental source:

Experimental source: Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: XPFIPRPIDTCRLRNGICFP GICRRPYYWIGTCNNGIGSC CARGWRS

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1

Data type	Count
13C chemical shifts	136
15N chemical shifts	43
1H chemical shifts	323

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	entity_1	1

Entities:

Entity 1, entity_1 47 residues - 5366.268 Da.

1

PCA

PRO

PHE

ILE

PRO

ARG

PRO

ILE

ASP

THR

2

CYS

ARG

LEU

ARG

ASN

GLY

ILE

CYS

PHE

PRO

3

GLY

ILE

CYS

ARG

PRO

TYR

TRP

ILE

4

GLY

THR

CYS

ASN

GLY

ILE

GLY

SER

CYS

5

CYS

ALA

ARG

GLY

TRP

ARG

SER

Samples:

sample_1: Chicken AvBD7 0.23 mM

sample_conditions_1: ionic strength: 0 M; pH: 4.5; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-1H TOCSY	sample_1	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_1	isotropic	sample_conditions_1

Software:

ARIA, Linge, O'Donoghue and Nilges - structure calculation

CNS, Brunger, Adams, Clore, Gros, Nilges and Read - refinement

CcpNMR, CCPN - chemical shift assignment, peak picking

TOPSPIN, Bruker Biospin - collection

NMR spectrometers:

Bruker AvanceIII 950 MHz
Bruker AvanceIII 700 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks