BMRB Entry 30905

Name: Rules for designing protein fold switches and their implications for the folding code
Published: 2022-05-09

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PDB ID: 7mq4
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR30905
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Rules for designing protein fold switches and their implications for the folding code

Deposition date:

2021-05-05

Original release date:

2022-05-09

Authors:

He, Y.; Chen, Y.; Ruan, B.; Choi, J.; Chen, Y.; Motabar, D.; Solomon, T.; Simmerman, R.; Kauffman, T.; Gallagher, T.; Bryan, P.; Orban, J.

Citation:

Citation: Ruan, Biao; He, Yanan; Chen, Yingwei; Choi, Eun Jung; Chen, Yihong; Motabar, Dana; Solomon, Tsega; Simmerman, Richard; Kauffman, Thomas; Gallagher, D. Travis; Orban, John; Bryan, Philip N.. "Design and characterization of a protein fold switching network" Nat. Commun. 14, 431-431 (2023).
PubMed: 36702827

Assembly members:

Assembly members:
entity_1, polymer, 95 residues, 10560.923 Da.

Natural source:

Natural source: Common Name: Thermus thermophilus Taxonomy ID: 274 Superkingdom: Bacteria Kingdom: not available Genus/species: Thermus thermophilus

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli BL21(DE3)

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: SAGIATFKLVLNGKTLKGET TTEAVDAATALKNFGAYAQD VGVDGAWTYDDATKTFTVGE RLIFKVKMPEDRMNDLARQL RQRDNVSRVEVTRYK

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1

Data type	Count
13C chemical shifts	208
15N chemical shifts	77
1H chemical shifts	128

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	unit_1	1

Entities:

Entity 1, unit_1 95 residues - 10560.923 Da.

1

SER

ALA

GLY

ILE

ALA

THR

PHE

LYS

LEU

VAL

2

LEU

ASN

GLY

LYS

THR

LEU

LYS

GLY

GLU

THR

3

THR

GLU

ALA

VAL

ASP

ALA

THR

ALA

4

LEU

LYS

ASN

PHE

GLY

ALA

TYR

ALA

GLN

ASP

5

VAL

GLY

VAL

ASP

GLY

ALA

TRP

THR

TYR

ASP

6

ASP

ALA

THR

LYS

THR

PHE

THR

VAL

GLY

GLU

7

ARG

LEU

ILE

PHE

LYS

VAL

LYS

MET

PRO

GLU

8

ASP

ARG

MET

ASN

ASP

LEU

ALA

ARG

GLN

LEU

9

ARG

GLN

ARG

ASP

ASN

VAL

SER

ARG

VAL

GLU

10

VAL

THR

ARG

TYR

LYS

Samples:

sample_1: Sb1, [U-13C; U-15N], 0.3 mM; potassium phosphate 100 mM

sample_conditions_1: ionic strength: 100 mM; pH: 7.0; pressure: 1 atm; temperature: 283 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HNHA	sample_1	isotropic	sample_conditions_1

Software:

CS-ROSETTA, Shen, Vernon, Baker and Bax - refinement, structure calculation

NMRFAM-SPARKY, NMRFAM - chemical shift assignment, peak picking

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

TopSpin, Bruker Biospin - collection

NMR spectrometers:

Bruker AVANCE 600 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks