BMRB Entry 30900

Name: LyeTx I
Published: 2021-10-01

Click here to enlarge.

PDB ID: 7mmm
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR30900
MolProbity Validation Chart

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title:

LyeTx I

Deposition date:

2021-04-29

Original release date:

2021-10-01

Authors:

Verly, R.

Citation:

Citation: Verly, R.; Lima, M.. "LyeTx I, a potent antimicrobial peptide from the venom of the spider Lycosa erythrognatha" Amino Acids 39, 135-144 (2010).
PubMed: 19946788

Assembly members:

Assembly members:
entity_1, polymer, 26 residues, 2837.517 Da.

Natural source:

Natural source: Common Name: Wolf spider, Scaptocosa raptoria Taxonomy ID: 332789 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Lycosa erythrognatha

Experimental source:

Experimental source: Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: IWLTALKFLGKNLGKHLAKQ QLAKLX

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1
spectral_peak_list
- spectral_peak_list_1

Data type	Count
1H chemical shifts	105

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	unit_1	1

Entities:

Entity 1, unit_1 26 residues - 2837.517 Da.

1

ILE

TRP

LEU

THR

ALA

LEU

LYS

PHE

LEU

GLY

2

LYS

ASN

LEU

GLY

LYS

HIS

LEU

ALA

LYS

GLN

3

GLN

LEU

ALA

LYS

LEU

NH2

Samples:

sample_1: LyeTx I 2 mM

sample_conditions_1: ionic strength: 20 mM; pH: 7; pressure: 1 atm; temperature: 293 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-1H TOCSY	sample_1	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1

Software:

X-PLOR NIH, Schwieters, Kuszewski, Tjandra and Clore - refinement

NMRDraw, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

NMRView, Johnson, One Moon Scientific - chemical shift assignment

PROCHECK / PROCHECK-NMR, Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Thornton - data analysis

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - data analysis

QUEEN, Nabuurs, Spronk, Krieger, Maassen, Vriend and Vuister - data analysis

NMR spectrometers:

Bruker Avance DRX spectrometer 600.043 MHz