BMRB Entry 30301

Name: Solution NMR Structure of a Class I Hydrophobin from Serpula lacrymans
Published: 2018-06-01

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PDB ID: 5w0y
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR30301
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution NMR Structure of a Class I Hydrophobin from Serpula lacrymans

Deposition date:

2017-06-01

Original release date:

2018-06-01

Authors:

Kenward, C.; Langelaan, D.

Citation:

Citation: Kenward, C.; Langelaan, D.. "Solution NMR Structure of a Class I Hydrophobin from Serpula lacrymans" .

Assembly members:

Assembly members:
Hydrophobin, polymer, 88 residues, 8440.296 Da.

Natural source:

Natural source: Common Name: Dry rot fungus Taxonomy ID: 578457 Superkingdom: Eukaryota Kingdom: Fungi Genus/species: Serpula Serpula lacrymans

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Hydrophobin: GSGSSQCNAGPVQCCNTLTS ASNSQAAGLIQQLGLSGVGA NVPVGINCNPITGIGAGSGS SCNANPACCDNVYTNGLGVQ CNPINVNL

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1

Data type	Count
13C chemical shifts	320
15N chemical shifts	100
1H chemical shifts	517

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	entity_1	1

Entities:

Entity 1, entity_1 88 residues - 8440.296 Da.

1

GLY

SER

GLY

SER

GLN

CYS

ASN

ALA

GLY

2

PRO

VAL

GLN

CYS

ASN

THR

LEU

THR

SER

3

ALA

SER

ASN

SER

GLN

ALA

GLY

LEU

ILE

4

GLN

LEU

GLY

LEU

SER

GLY

VAL

GLY

ALA

5

ASN

VAL

PRO

VAL

GLY

ILE

ASN

CYS

ASN

PRO

6

ILE

THR

GLY

ILE

GLY

ALA

GLY

SER

GLY

SER

7

SER

CYS

ASN

ALA

ASN

PRO

ALA

CYS

ASP

8

ASN

VAL

TYR

THR

ASN

GLY

LEU

GLY

VAL

GLN

9

CYS

ASN

PRO

ILE

ASN

VAL

ASN

LEU

Samples:

sample_1: MES 20 mM; Slahyd1, [U-13C; U-15N], 800 uM; sodium chloride 50 mM

sample_2: MES 20 mM; Slahyd1, [U-15N], 100 uM; sodium chloride 50 mM

sample_conditions_1: ionic strength: 70 mM; pH: 6.5; pressure: 1 atm; temperature: 298.15 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D HN(CA)CO	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_1	isotropic	sample_conditions_1
3D HCCH-COSY	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
2D 1H-15N HSQC	sample_2	isotropic	sample_conditions_1

Software:

ARIA v2.3.1, Linge, O'Donoghue and Nilges - refinement, structure calculation

Analysis, CCPN - chemical shift assignment, data analysis

NMRDraw, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

VNMR v2.4.2, Varian - collection

NMR spectrometers:

Varian INOVA 600 MHz
Bruker AvanceIII 700 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks