BMRB Entry 30256

Name: Brassica napus DGAT1 exosite
Published: 2017-12-26

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PDB ID: 5uzl
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR30256
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Brassica napus DGAT1 exosite

Deposition date:

2017-02-26

Original release date:

2017-12-26

Authors:

Acedo, J.; Vederas, J.

Citation:

Citation: Caldo, Kristian Mark; Acedo, Jeella; Panigrahi, Rashmi; Vederas, John; Weselake, Randall; Lemieux, M Joanne. "Diacylglycerol Acyltransferase 1 Is Regulated by Its N-Terminal Domain in Response to Allosteric Effectors" Plant Physiol. 175, 667-680 (2017).
PubMed: 28827454

Assembly members:

Assembly members:
O-acyltransferase, polymer, 33 residues, 3877.332 Da.

Natural source:

Natural source: Common Name: Rape Taxonomy ID: 3708 Superkingdom: Eukaryota Kingdom: Viridiplantae Genus/species: Brassica napus

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli

Entity Sequences (FASTA):

Entity Sequences (FASTA):
O-acyltransferase: NVDVRYTYRPSVPAHRRVRE SPLSSDAIFKQSH

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1

Data type	Count
15N chemical shifts	31
1H chemical shifts	234

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	entity_1	1

Entities:

Entity 1, entity_1 33 residues - 3877.332 Da.

1

ASN

VAL

ASP

VAL

ARG

TYR

THR

TYR

ARG

PRO

2

SER

VAL

PRO

ALA

HIS

ARG

VAL

ARG

GLU

3

SER

PRO

LEU

SER

ASP

ALA

ILE

PHE

LYS

4

GLN

SER

HIS

Samples:

sample_1: BnaDGAT1 exosite 1 mM; DSS 0.01%; sodium chloride 25 mM; sodium phosphate 30 mM

sample_conditions_1: ionic strength: 55 mM; pH: 6.3; pressure: 1 atm; temperature: 300 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D NOESY	sample_1	isotropic	sample_conditions_1
2D TOCSY	sample_1	isotropic	sample_conditions_1
2D DQF-COSY	sample_1	isotropic	sample_conditions_1
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1

Software:

CYANA, Guntert, Mumenthaler and Wuthrich - refinement, structure calculation

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

NMRView, Johnson, One Moon Scientific - chemical shift assignment, peak picking

NMR spectrometers:

Varian VNMRS 700 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks