BMRB Entry 28066

Title:
1H, 13C assignment for cyclosporin D in complex with DPC micelles
Deposition date:
2020-02-04
Original release date:
2019-03-04
Authors:
Efimov, Sergey; Kobchikova, Polina; Klochkov, Vladimir
Citation:

Citation: Kobchikova, Polina; Efimov, Sergey; Klochkov, Vladimir. "Binding of Different Cyclosporin Variants to Micelles Evidenced by NMR and MD Simulations"  Membranes (Basel) 13, 196-196 (2023).
PubMed: 36837699

Assembly members:

Assembly members:
CsD, polymer, 11 residues, 1216.7 Da.

Natural source:

Natural source:   Common Name: Tolypocladium inflatum   Taxonomy ID: 29910   Superkingdom: Eukaryota   Kingdom: Fungi   Genus/species: Tolypocladium inflatum

Experimental source:

Experimental source:   Production method: obtained from a vendor   Host organism: Tolypocladium inflatum

Entity Sequences (FASTA):

Entity Sequences (FASTA):
CsD: XVGLVLAXLLV

Data sets:
Data typeCount
13C chemical shifts43
1H chemical shifts112

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1CsD1

Entities:

Entity 1, CsD 11 residues - 1216.7 Da.

1   BMTVALSARMLEVALMLEALADALMLEMLE
2   MVA

Samples:

sample_1: CsD 2 mM

sample_2: CsD 2 mM

sample_conditions_1: pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D DQF-COSYsample_1isotropicsample_conditions_1
2D 1H-1H TOCSYsample_1isotropicsample_conditions_1
2D 1H-13C HSQCsample_1isotropicsample_conditions_1
2D DQF-COSYsample_2isotropicsample_conditions_1
2D 1H-1H TOCSYsample_2isotropicsample_conditions_1
2D 1H-13C HSQCsample_2isotropicsample_conditions_1
2D 1H-1H NOESYsample_1isotropicsample_conditions_1
2D 1H-1H NOESYsample_2isotropicsample_conditions_1

Software:

TOPSPIN, Bruker Biospin - collection

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

SPARKY, Goddard - peak picking

NMR spectrometers:

  • Bruker Avance 700 MHz